mirror of https://github.com/msberends/AMR.git
62 lines
3.1 KiB
R
62 lines
3.1 KiB
R
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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# SOURCE #
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# https://gitlab.com/msberends/AMR #
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# #
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# LICENCE #
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# (c) 2018-2020 Berends MS, Luz CF et al. #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# Visit our website for more info: https://msberends.gitlab.io/AMR. #
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# ==================================================================== #
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context("ab_property.R")
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test_that("ab_property works", {
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expect_identical(ab_name("AMX"), "Amoxicillin")
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expect_identical(as.character(ab_atc("AMX")), "J01CA04")
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expect_identical(ab_cid("AMX"), as.integer(33613))
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expect_equal(class(ab_tradenames("AMX")), "character")
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expect_equal(class(ab_tradenames(c("AMX", "AMX"))), "list")
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expect_identical(ab_group("AMX"), "Beta-lactams/penicillins")
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expect_identical(ab_atc_group1("AMX"), "Beta-lactam antibacterials, penicillins")
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expect_identical(ab_atc_group2("AMX"), "Penicillins with extended spectrum")
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expect_identical(ab_name("Fluclox"), "Flucloxacillin")
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expect_identical(ab_name("fluklox"), "Flucloxacillin")
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expect_identical(ab_name("floxapen"), "Flucloxacillin")
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expect_identical(ab_name(21319), "Flucloxacillin")
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expect_identical(ab_name("J01CF05"), "Flucloxacillin")
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expect_identical(ab_ddd("AMX", "oral"), 1)
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expect_identical(ab_ddd("AMX", "oral", units = TRUE), "g")
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expect_identical(ab_ddd("AMX", "iv"), 1)
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expect_identical(ab_ddd("AMX", "iv", units = TRUE), "g")
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expect_identical(ab_name(x = c("AMC", "PLB")), c("Amoxicillin/clavulanic acid", "Polymyxin B"))
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expect_identical(ab_name(x = c("AMC", "PLB"), tolower = TRUE),
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c("amoxicillin/clavulanic acid", "polymyxin B"))
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expect_equal(class(ab_info("AMX")), "list")
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expect_error(ab_property("amox", "invalid property"))
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expect_error(ab_name("amox", language = "INVALID"))
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expect_output(print(ab_name("amox", language = NULL)))
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expect_equal(ab_name("21066-6", language = NULL), "Ampicillin")
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expect_equal(ab_loinc("ampicillin"),
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c("21066-6", "3355-5", "33562-0", "33919-2", "43883-8", "43884-6", "87604-5"))
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})
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