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181 lines
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<h1>Calculate resistance of isolates</h1>
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<div class="hidden name"><code>rsi.Rd</code></div>
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</div>
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<div class="ref-description">
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<p>This function is deprecated. Use the <code><a href='portion.html'>portion</a></code> functions instead.</p>
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</div>
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<pre class="usage"><span class='fu'>rsi</span>(<span class='no'>ab1</span>, <span class='kw'>ab2</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>interpretation</span> <span class='kw'>=</span> <span class='st'>"IR"</span>, <span class='kw'>minimum</span> <span class='kw'>=</span> <span class='fl'>30</span>,
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<span class='kw'>as_percent</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='no'>...</span>)</pre>
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<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
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<table class="ref-arguments">
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<colgroup><col class="name" /><col class="desc" /></colgroup>
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<tr>
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<th>ab1, ab2</th>
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<td><p>vector (or column) with antibiotic interpretations. It will be transformed internally with <code><a href='as.rsi.html'>as.rsi</a></code> if needed.</p></td>
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</tr>
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<tr>
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<th>interpretation</th>
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<td><p>antimicrobial interpretation to check for</p></td>
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</tr>
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<tr>
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<th>minimum</th>
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<td><p>the minimal amount of available isolates. Any number lower than <code>minimum</code> will return <code>NA</code> with a warning. The default number of <code>30</code> isolates is advised by the Clinical and Laboratory Standards Institute (CLSI) as best practice, see Source.</p></td>
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</tr>
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<tr>
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<th>as_percent</th>
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<td><p>a logical to indicate whether the output must be returned as a hundred fold with % sign (a character). A value of <code>0.123456</code> will then be returned as <code>"12.3%"</code>.</p></td>
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</tr>
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<tr>
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<th>...</th>
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<td><p>deprecated parameters to support usage on older versions</p></td>
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</tr>
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<h2>Contents</h2>
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<ul class="nav nav-pills nav-stacked">
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<li><a href="#arguments">Arguments</a></li>
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<p>Developed by Matthijs S. Berends, Christian F. Luz.</p>
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