| .. |
|
aa_amr-package.R
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
aa_globals.R
|
bind_rows
|
2023-02-10 17:09:48 +01:00 |
|
aa_helper_functions.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
aa_helper_pm_functions.R
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
aa_options.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
ab_from_text.R
|
documentation, file permissions
|
2023-01-19 12:54:53 +01:00 |
|
ab_property.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
ab_selectors.R
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
ab.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
age.R
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
antibiogram.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
atc_online.R
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
av_from_text.R
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
av_property.R
|
bring back antibiogram(), without deps
|
2023-02-10 16:18:00 +01:00 |
|
av.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
availability.R
|
Replace RSI with SIR
|
2023-01-21 23:47:20 +01:00 |
|
bug_drug_combinations.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
count.R
|
Replace RSI with SIR
|
2023-01-21 23:47:20 +01:00 |
|
custom_antimicrobials.R
|
fix for binding rows
|
2023-02-12 11:20:14 +01:00 |
|
custom_eucast_rules.R
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
custom_microorganisms.R
|
fix for binding rows
|
2023-02-12 11:20:14 +01:00 |
|
data.R
|
bring back antibiogram(), without deps
|
2023-02-10 16:18:00 +01:00 |
|
disk.R
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
eucast_rules.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
first_isolate.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
g.test.R
|
prelim fix for g.test
|
2023-01-30 12:26:48 +01:00 |
|
get_episode.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
ggplot_pca.R
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
ggplot_sir.R
|
bring back antibiogram(), without deps
|
2023-02-10 16:18:00 +01:00 |
|
guess_ab_col.R
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
italicise_taxonomy.R
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
join_microorganisms.R
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
key_antimicrobials.R
|
Replace RSI with SIR
|
2023-01-21 23:47:20 +01:00 |
|
kurtosis.R
|
support new mo codes
|
2022-12-27 15:16:15 +01:00 |
|
like.R
|
support new mo codes
|
2022-12-27 15:16:15 +01:00 |
|
mdro.R
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
mean_amr_distance.R
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
mic.R
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
mo_matching_score.R
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
mo_property.R
|
fix for Salmonella group A, unit tests
|
2023-02-10 16:47:25 +01:00 |
|
mo_source.R
|
add all options to documentation
|
2023-01-23 20:07:57 +01:00 |
|
mo.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
pca.R
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
plot.R
|
fix for binding rows
|
2023-02-12 11:20:14 +01:00 |
|
proportion.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
random.R
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
resistance_predict.R
|
bring back antibiogram(), without deps
|
2023-02-10 16:18:00 +01:00 |
|
sir_calc.R
|
fix for binding rows
|
2023-02-12 11:20:14 +01:00 |
|
sir_df.R
|
Replace RSI with SIR
|
2023-01-21 23:47:20 +01:00 |
|
sir.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
skewness.R
|
support new mo codes
|
2022-12-27 15:16:15 +01:00 |
|
sysdata.rda
|
pm_bind_rows
|
2023-02-11 22:28:48 +01:00 |
|
translate.R
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
vctrs.R
|
Replace RSI with SIR
|
2023-01-21 23:47:20 +01:00 |
|
whocc.R
|
support new mo codes
|
2022-12-27 15:16:15 +01:00 |
|
zz_deprecated.R
|
documentation, unit tests
|
2023-01-24 10:20:27 +01:00 |
|
zzz.R
|
bring back antibiogram(), without deps
|
2023-02-10 16:18:00 +01:00 |
