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AMR/R/deprecated.R

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R
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# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# SOURCE #
# https://github.com/msberends/AMR #
# #
# LICENCE #
# (c) 2018-2020 Berends MS, Luz CF et al. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# Visit our website for more info: https://msberends.github.io/AMR. #
# ==================================================================== #
#' Deprecated functions
#'
#' These functions are so-called '[Deprecated]'. They will be removed in a future release. Using the functions will give a warning with the name of the function it has been replaced by (if there is one).
#' @inheritSection lifecycle Retired lifecycle
#' @inheritSection AMR Read more on our website!
#' @export
#' @keywords internal
#' @name AMR-deprecated
#' @export
portion_R <- function(...) {
.Deprecated("resistance()", package = "AMR")
proportion_R(...)
}
#' @rdname AMR-deprecated
#' @export
portion_IR <- function(...) {
.Deprecated("proportion_IR()", package = "AMR")
proportion_IR(...)
}
#' @rdname AMR-deprecated
#' @export
portion_I <- function(...) {
.Deprecated("proportion_I()", package = "AMR")
proportion_I(...)
}
#' @rdname AMR-deprecated
#' @export
portion_SI <- function(...) {
.Deprecated("susceptibility()", package = "AMR")
proportion_SI(...)
}
#' @rdname AMR-deprecated
#' @export
portion_S <- function(...) {
.Deprecated("proportion_S()", package = "AMR")
proportion_S(...)
}
#' @rdname AMR-deprecated
#' @export
portion_df <- function(...) {
.Deprecated("proportion_df()", package = "AMR")
proportion_df(...)
}