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72 lines
2.7 KiB
R
72 lines
2.7 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/deprecated.R
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\name{AMR-deprecated}
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\alias{AMR-deprecated}
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\alias{p_symbol}
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\alias{filter_first_weighted_isolate}
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\alias{key_antibiotics}
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\alias{key_antibiotics_equal}
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\title{Deprecated Functions}
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\usage{
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p_symbol(p, emptychar = " ")
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filter_first_weighted_isolate(
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x = NULL,
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col_date = NULL,
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col_patient_id = NULL,
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col_mo = NULL,
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...
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)
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key_antibiotics(
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x = NULL,
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col_mo = NULL,
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universal_1 = guess_ab_col(x, "amoxicillin"),
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universal_2 = guess_ab_col(x, "amoxicillin/clavulanic acid"),
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universal_3 = guess_ab_col(x, "cefuroxime"),
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universal_4 = guess_ab_col(x, "piperacillin/tazobactam"),
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universal_5 = guess_ab_col(x, "ciprofloxacin"),
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universal_6 = guess_ab_col(x, "trimethoprim/sulfamethoxazole"),
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GramPos_1 = guess_ab_col(x, "vancomycin"),
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GramPos_2 = guess_ab_col(x, "teicoplanin"),
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GramPos_3 = guess_ab_col(x, "tetracycline"),
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GramPos_4 = guess_ab_col(x, "erythromycin"),
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GramPos_5 = guess_ab_col(x, "oxacillin"),
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GramPos_6 = guess_ab_col(x, "rifampin"),
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GramNeg_1 = guess_ab_col(x, "gentamicin"),
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GramNeg_2 = guess_ab_col(x, "tobramycin"),
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GramNeg_3 = guess_ab_col(x, "colistin"),
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GramNeg_4 = guess_ab_col(x, "cefotaxime"),
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GramNeg_5 = guess_ab_col(x, "ceftazidime"),
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GramNeg_6 = guess_ab_col(x, "meropenem"),
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warnings = TRUE,
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...
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)
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key_antibiotics_equal(
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y,
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z,
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type = "keyantimicrobials",
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ignore_I = TRUE,
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points_threshold = 2,
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info = FALSE,
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na.rm = TRUE,
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...
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)
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}
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\description{
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These functions are so-called '\link{Deprecated}'. They will be removed in a future release. Using the functions will give a warning with the name of the function it has been replaced by (if there is one).
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}
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\section{Retired Lifecycle}{
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\if{html}{\figure{lifecycle_retired.svg}{options: style=margin-bottom:5px} \cr}
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The \link[=lifecycle]{lifecycle} of this function is \strong{retired}. A retired function is no longer under active development, and (if appropiate) a better alternative is available. No new arguments will be added, and only the most critical bugs will be fixed. In a future version, this function will be removed.
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}
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\section{Read more on Our Website!}{
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On our website \url{https://msberends.github.io/AMR/} you can find \href{https://msberends.github.io/AMR/articles/AMR.html}{a comprehensive tutorial} about how to conduct AMR data analysis, the \href{https://msberends.github.io/AMR/reference/}{complete documentation of all functions} and \href{https://msberends.github.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}. As we would like to better understand the backgrounds and needs of our users, please \href{https://msberends.github.io/AMR/survey.html}{participate in our survey}!
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}
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\keyword{internal}
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