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99 lines
4.2 KiB
R
99 lines
4.2 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/atc_online.R
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\name{atc_online_property}
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\alias{atc_online_property}
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\alias{atc_online_groups}
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\alias{atc_online_ddd}
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\alias{atc_online_ddd_units}
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\title{Get ATC Properties from WHOCC Website}
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\source{
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\url{https://www.whocc.no/atc_ddd_alterations__cumulative/ddd_alterations/abbrevations/}
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}
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\usage{
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atc_online_property(
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atc_code,
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property,
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administration = "O",
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url = "https://www.whocc.no/atc_ddd_index/?code=\%s&showdescription=no",
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url_vet = "https://www.whocc.no/atcvet/atcvet_index/?code=\%s&showdescription=no"
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)
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atc_online_groups(atc_code, ...)
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atc_online_ddd(atc_code, ...)
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atc_online_ddd_units(atc_code, ...)
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}
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\arguments{
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\item{atc_code}{a \link{character} (vector) with ATC code(s) of antibiotics, will be coerced with \code{\link[=as.ab]{as.ab()}} and \code{\link[=ab_atc]{ab_atc()}} internally if not a valid ATC code}
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\item{property}{property of an ATC code. Valid values are \code{"ATC"}, \code{"Name"}, \code{"DDD"}, \code{"U"} (\code{"unit"}), \code{"Adm.R"}, \code{"Note"} and \code{groups}. For this last option, all hierarchical groups of an ATC code will be returned, see \emph{Examples}.}
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\item{administration}{type of administration when using \code{property = "Adm.R"}, see \emph{Details}}
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\item{url}{url of website of the WHOCC. The sign \verb{\%s} can be used as a placeholder for ATC codes.}
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\item{url_vet}{url of website of the WHOCC for veterinary medicine. The sign \verb{\%s} can be used as a placeholder for ATC_vet codes (that all start with "Q").}
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\item{...}{arguments to pass on to \code{atc_property}}
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}
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\description{
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Gets data from the WHOCC website to determine properties of an Anatomical Therapeutic Chemical (ATC) (e.g. an antibiotic), such as the name, defined daily dose (DDD) or standard unit.
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}
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\details{
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Options for argument \code{administration}:
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\itemize{
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\item \code{"Implant"} = Implant
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\item \code{"Inhal"} = Inhalation
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\item \code{"Instill"} = Instillation
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\item \code{"N"} = nasal
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\item \code{"O"} = oral
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\item \code{"P"} = parenteral
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\item \code{"R"} = rectal
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\item \code{"SL"} = sublingual/buccal
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\item \code{"TD"} = transdermal
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\item \code{"V"} = vaginal
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}
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Abbreviations of return values when using \code{property = "U"} (unit):
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\itemize{
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\item \code{"g"} = gram
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\item \code{"mg"} = milligram
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\item `"mcg"`` = microgram
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\item \code{"U"} = unit
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\item \code{"TU"} = thousand units
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\item \code{"MU"} = million units
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\item \code{"mmol"} = millimole
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\item \code{"ml"} = millilitre (e.g. eyedrops)
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}
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\strong{N.B. This function requires an internet connection and only works if the following packages are installed: \code{curl}, \code{rvest}, \code{xml2}.}
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}
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\section{Stable Lifecycle}{
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\if{html}{\figure{lifecycle_stable.svg}{options: style=margin-bottom:"5"} \cr}
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The \link[=lifecycle]{lifecycle} of this function is \strong{stable}. In a stable function, major changes are unlikely. This means that the unlying code will generally evolve by adding new arguments; removing arguments or changing the meaning of existing arguments will be avoided.
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If the unlying code needs breaking changes, they will occur gradually. For example, an argument will be deprecated and first continue to work, but will emit a message informing you of the change. Next, typically after at least one newly released version on CRAN, the message will be transformed to an error.
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}
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\section{Read more on Our Website!}{
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On our website \url{https://msberends.github.io/AMR/} you can find \href{https://msberends.github.io/AMR/articles/AMR.html}{a comprehensive tutorial} about how to conduct AMR data analysis, the \href{https://msberends.github.io/AMR/reference/}{complete documentation of all functions} and \href{https://msberends.github.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
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}
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\examples{
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\donttest{
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if (requireNamespace("curl") && requireNamespace("rvest") && requireNamespace("xml2")) {
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# oral DDD (Defined Daily Dose) of amoxicillin
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atc_online_property("J01CA04", "DDD", "O")
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atc_online_ddd(ab_atc("amox"))
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# parenteral DDD (Defined Daily Dose) of amoxicillin
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atc_online_property("J01CA04", "DDD", "P")
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atc_online_property("J01CA04", property = "groups") # search hierarchical groups of amoxicillin
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}
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}
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}
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