AMR/R/deprecated.R

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R
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# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# SOURCE #
# https://gitlab.com/msberends/AMR #
# #
# LICENCE #
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# This R package was created for academic research and was publicly #
# released in the hope that it will be useful, but it comes WITHOUT #
# ANY WARRANTY OR LIABILITY. #
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
# ==================================================================== #
#' Deprecated functions
#'
#' These functions are so-called '\link{Deprecated}'. They will be removed in a future release. Using the functions will give a warning with the name of the function it has been replaced by (if there is one).
#' @inheritSection AMR Read more on our website!
#' @export
#' @keywords internal
#' @name AMR-deprecated
#' @rdname AMR-deprecated
p.symbol <- function(...) {
.Deprecated("p_symbol", package = "AMR")
AMR::p_symbol(...)
}
#' @rdname AMR-deprecated
#' @export
portion_R <- function(...) {
.Deprecated("resistance", package = "AMR")
proportion_R(...)
}
#' @rdname AMR-deprecated
#' @export
portion_IR <- function(...) {
.Deprecated("proportion_IR", package = "AMR")
proportion_IR(...)
}
#' @rdname AMR-deprecated
#' @export
portion_I <- function(...) {
.Deprecated("proportion_I", package = "AMR")
proportion_I(...)
}
#' @rdname AMR-deprecated
#' @export
portion_SI <- function(...) {
.Deprecated("susceptibility", package = "AMR")
proportion_SI(...)
}
#' @rdname AMR-deprecated
#' @export
portion_S <- function(...) {
.Deprecated("proportion_S", package = "AMR")
proportion_S(...)
}