mirror of https://github.com/msberends/AMR.git
49 lines
1.7 KiB
R
Executable File
49 lines
1.7 KiB
R
Executable File
context("atc.R")
|
|
|
|
test_that("atc_property works", {
|
|
skip_on_cran() # relies on internet connection of server, don't test
|
|
skip_on_appveyor() # security error on AppVeyor
|
|
|
|
if (!is.null(curl::nslookup("www.whocc.no", error = FALSE))) {
|
|
expect_equal(tolower(atc_property("J01CA04", property = "Name")), "amoxicillin")
|
|
expect_equal(atc_property("J01CA04", property = "unit"), "g")
|
|
expect_equal(atc_property("J01CA04", property = "DDD"),
|
|
atc_ddd("J01CA04"))
|
|
|
|
# expect_identical(atc_property("J01CA04", property = "Groups"),
|
|
# atc_groups("J01CA04"))
|
|
|
|
expect_warning(atc_property("ABCDEFG", property = "DDD"))
|
|
|
|
expect_error(atc_property("J01CA04", property = c(1:5)))
|
|
expect_error(atc_property("J01CA04", property = "test"))
|
|
expect_error(atc_property("J01CA04", property = "test", administration = c(1:5)))
|
|
}
|
|
})
|
|
|
|
test_that("guess_atc works", {
|
|
expect_equal(as.character(guess_atc(c("J01FA01",
|
|
"Erythromycin",
|
|
"eryt",
|
|
"ERYT",
|
|
"ERY",
|
|
"Erythrocin",
|
|
"Eryzole",
|
|
"Pediamycin"))),
|
|
rep("J01FA01", 8))
|
|
|
|
expect_identical(class(as.atc("amox")), "atc")
|
|
expect_identical(class(pull(antibiotics, atc)), "atc")
|
|
expect_identical(ab_trivial_nl("Cefmenoxim"), "Cefmenoxim")
|
|
|
|
expect_warning(as.atc("Z00ZZ00")) # not yet available in data set
|
|
expect_warning(as.atc("UNKNOWN"))
|
|
|
|
expect_output(print(as.atc("amox")))
|
|
|
|
# first 5 chars of official name
|
|
expect_equal(as.character(as.atc(c("nitro", "cipro"))),
|
|
c("J01XE01", "J01MA02"))
|
|
|
|
})
|