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31 lines
1.2 KiB
R
Executable File
31 lines
1.2 KiB
R
Executable File
context("mdro.R")
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test_that("MDRO works", {
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library(dplyr)
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expect_error(suppressWarnings(MDRO(septic_patients, "invalid", col_bactid = "mo", info = TRUE)))
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expect_error(suppressWarnings(MDRO(septic_patients, "fr", col_bactid = "mo", info = TRUE)))
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expect_error(suppressWarnings(MDRO(septic_patients, country = c("de", "nl"), info = TRUE)))
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expect_error(suppressWarnings(MDRO(septic_patients, col_mo = "invalid", info = TRUE)))
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outcome <- suppressWarnings(MDRO(septic_patients))
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outcome <- suppressWarnings(EUCAST_exceptional_phenotypes(septic_patients, info = TRUE))
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# check class
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expect_equal(outcome %>% class(), c('ordered', 'factor'))
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outcome <- suppressWarnings(MDRO(septic_patients, "nl", info = TRUE))
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# check class
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expect_equal(outcome %>% class(), c('ordered', 'factor'))
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# septic_patients should have these finding using Dutch guidelines
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expect_equal(outcome %>% freq() %>% pull(count),
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c(2, 14)) # 2 unconfirmed, 14 positive
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expect_equal(BRMO(septic_patients, info = FALSE), MDRO(septic_patients, "nl", info = FALSE))
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# still working on German guidelines
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expect_error(suppressWarnings(MRGN(septic_patients, info = TRUE)))
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})
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