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AMR/data-raw/interpretive_rules.tsv
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1# -------------------------------------------------------------------------------------------------------------------------------
2# For editing this interpretive rules reference file, these values can all be used for targeting antibiotics:
3# aminoglycosides, aminopenicillins, antifungals, antimycobacterials, betalactams, betalactams_with_inhibitor, carbapenems, cephalosporins, cephalosporins_1st, cephalosporins_2nd, cephalosporins_3rd, cephalosporins_4th, cephalosporins_5th, cephalosporins_except_CAZ, fluoroquinolones, glycopeptides, glycopeptides_except_lipo, lincosamides, lipoglycopeptides, macrolides, oxazolidinones, penicillins, polymyxins, quinolones, streptogramins, tetracyclines, tetracyclines_except_TGC, trimethoprims, ureidopenicillins
4# and all separate EARS-Net letter codes such as AMC. They can be separated by comma: 'AMC, fluoroquinolones'.
5# The 'if_mo_property' column can be any column name from the AMR::microorganisms data set, or 'genus_species' or 'gramstain'. If 'this_value' exists in AMR::microorganisms.groups$mo_group_name it will be expanded in interpretive_rules() to all relevant species occuring in microorganisms.groups$mo_name before further processing of the line in this file.
6# The like.is.one_of column must be 'like' or 'is' or 'one_of' ('like' will read the 'this_value' column as regular expression)
7# The EUCAST guideline contains references to the 'Burkholderia cepacia complex'. All species in this group are noted on the 'B.cepacia' sheet of the EUCAST Clinical Breakpoint v.10.0 Excel file of 2020 and later
8# >>>>> IF YOU WANT TO IMPORT THIS FILE INTO YOUR OWN SOFTWARE, HAVE THE FIRST 9 LINES SKIPPED <<<<<
9# -------------------------------------------------------------------------------------------------------------------------------
10rule.providerreference.rule_groupreference.versionreference.ruleif_mo_propertylike.is.one_ofthis_valueand_these_antibioticshave_these_valuesthen_change_these_antibioticsto_valuenote
11EUCASTBreakpoints10Aerococcus sanguinicolagenus_speciesisAerococcus sanguinicolaNORSfluoroquinolonesS
12EUCASTBreakpoints10Aerococcus sanguinicolagenus_speciesisAerococcus sanguinicolaNORIfluoroquinolonesI
13EUCASTBreakpoints10Aerococcus sanguinicolagenus_speciesisAerococcus sanguinicolaNORRfluoroquinolonesR
14EUCASTBreakpoints10Aerococcus sanguinicolagenus_speciesisAerococcus sanguinicolaCIPSLVXS
15EUCASTBreakpoints10Aerococcus sanguinicolagenus_speciesisAerococcus sanguinicolaCIPILVXI
16EUCASTBreakpoints10Aerococcus urinaegenus_speciesisAerococcus sanguinicolaCIPRLVXR
17EUCASTBreakpoints10Aerococcus urinaegenus_speciesisAerococcus urinaeNORSfluoroquinolonesS
18EUCASTBreakpoints10Aerococcus urinaegenus_speciesisAerococcus urinaeNORIfluoroquinolonesI
19EUCASTBreakpoints10Aerococcus urinaegenus_speciesisAerococcus urinaeNORRfluoroquinolonesR
20EUCASTBreakpoints10Aerococcus urinaegenus_speciesisAerococcus urinaeCIPSLVXS
21EUCASTBreakpoints10Aerococcus urinaegenus_speciesisAerococcus urinaeCIPILVXI
22EUCASTBreakpoints10Aerococcus urinaegenus_speciesisAerococcus urinaeCIPRLVXR
23EUCASTBreakpoints10Anaerobic Gram-negativesgenusone_ofBacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, PrevotellaPENSAMP, AMX, PIP, TZP, TICS
24EUCASTBreakpoints10Anaerobic Gram-negativesgenusone_ofBacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, PrevotellaPENIAMP, AMX, PIP, TZP, TICI
25EUCASTBreakpoints10Anaerobic Gram-negativesgenusone_ofBacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, PrevotellaPENRAMP, AMX, PIP, TZP, TICR
26EUCASTBreakpoints10Anaerobic Gram-positivesgenusone_ofActinomyces, Bifidobacterium, Clostridium, Clostridioides, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, PropionibacteriumPENSAMP, AMX, PIP, TZP, TICS
27EUCASTBreakpoints10Anaerobic Gram-positivesgenusone_ofActinomyces, Bifidobacterium, Clostridium, Clostridioides, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, PropionibacteriumPENIAMP, AMX, PIP, TZP, TICI
28EUCASTBreakpoints10Anaerobic Gram-positivesgenusone_ofActinomyces, Bifidobacterium, Clostridium, Clostridioides, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, PropionibacteriumPENRAMP, AMX, PIP, TZP, TICR
29EUCASTBreakpoints10Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCYSDOXS
30EUCASTBreakpoints10Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCYIDOXI
31EUCASTBreakpoints10Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCYRDOXR
32EUCASTBreakpoints10Campylobacter coligenus_speciesisCampylobacter coliERYSAZM, CLRS
33EUCASTBreakpoints10Campylobacter coligenus_speciesisCampylobacter coliERYIAZM, CLRI
34EUCASTBreakpoints10Campylobacter coligenus_speciesisCampylobacter coliERYRAZM, CLRR
35EUCASTBreakpoints10Campylobacter coligenus_speciesisCampylobacter coliTCYSDOXS
36EUCASTBreakpoints10Campylobacter coligenus_speciesisCampylobacter coliTCYIDOXI
37EUCASTBreakpoints10Campylobacter coligenus_speciesisCampylobacter coliTCYRDOXR
38EUCASTBreakpoints10Campylobacter jejunigenus_speciesisCampylobacter jejuniERYSAZM, CLRS
39EUCASTBreakpoints10Campylobacter jejunigenus_speciesisCampylobacter jejuniERYIAZM, CLRI
40EUCASTBreakpoints10Campylobacter jejunigenus_speciesisCampylobacter jejuniERYRAZM, CLRR
41EUCASTBreakpoints10Campylobacter jejunigenus_speciesisCampylobacter jejuniTCYSDOXS
42EUCASTBreakpoints10Campylobacter jejunigenus_speciesisCampylobacter jejuniTCYIDOXI
43EUCASTBreakpoints10Campylobacter jejunigenus_speciesisCampylobacter jejuniTCYRDOXR
44EUCASTBreakpoints10Enterobacterales (Order)orderisEnterobacteralesAMPSAMXS
45EUCASTBreakpoints10Enterobacterales (Order)orderisEnterobacteralesAMPIAMXI
46EUCASTBreakpoints10Enterobacterales (Order)orderisEnterobacteralesAMPRAMXR
47EUCASTBreakpoints10EnterococcusgenusisEnterococcusAMPSAMX, AMC, PIP, TZPS
48EUCASTBreakpoints10EnterococcusgenusisEnterococcusAMPIAMX, AMC, PIP, TZPI
49EUCASTBreakpoints10EnterococcusgenusisEnterococcusAMPRAMX, AMC, PIP, TZPR
50EUCASTBreakpoints10EnterococcusgenusisEnterococcusNORSCIP, LVXS
51EUCASTBreakpoints10EnterococcusgenusisEnterococcusNORICIP, LVXI
52EUCASTBreakpoints10EnterococcusgenusisEnterococcusNORRCIP, LVXR
53EUCASTBreakpoints10Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMPSAMX, PIPS
54EUCASTBreakpoints10Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMPIAMX, PIPI
55EUCASTBreakpoints10Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMPRAMX, PIPR
56EUCASTBreakpoints10Haemophilus influenzaegenus_speciesisHaemophilus influenzaePENSAMP, AMX, AMC, PIP, TZPS
57EUCASTBreakpoints10Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCSTZPS
58EUCASTBreakpoints10Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCITZPI
59EUCASTBreakpoints10Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCRTZPR
60EUCASTBreakpoints10Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNALSCIP, LVX, MFX, OFXS
61EUCASTBreakpoints10Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYSDOX, MNOS
62EUCASTBreakpoints10Kingella kingaegenus_speciesisKingella kingaePENSAMP, AMXS
63EUCASTBreakpoints10Kingella kingaegenus_speciesisKingella kingaePENIAMP, AMXI
64EUCASTBreakpoints10Kingella kingaegenus_speciesisKingella kingaePENRAMP, AMXR
65EUCASTBreakpoints10Kingella kingaegenus_speciesisKingella kingaeERYSAZM, CLRS
66EUCASTBreakpoints10Kingella kingaegenus_speciesisKingella kingaeERYIAZM, CLRI
67EUCASTBreakpoints10Kingella kingaegenus_speciesisKingella kingaeERYRAZM, CLRR
68EUCASTBreakpoints10Kingella kingaegenus_speciesisKingella kingaeTCYSDOXS
69EUCASTBreakpoints10Kingella kingaegenus_speciesisKingella kingaeTCYIDOXI
70EUCASTBreakpoints10Kingella kingaegenus_speciesisKingella kingaeTCYRDOXR
71EUCASTBreakpoints10Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCSTZPS
72EUCASTBreakpoints10Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCITZPI
73EUCASTBreakpoints10Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCRTZPR
74EUCASTBreakpoints10Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNALSCIP, LVX, MFX, OFXS
75EUCASTBreakpoints10Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYSAZM, CLR, RXTS
76EUCASTBreakpoints10Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYIAZM, CLR, RXTI
77EUCASTBreakpoints10Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYRAZM, CLR, RXTR
78EUCASTBreakpoints10Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisTCYSDOX, MNOS
79EUCASTBreakpoints10Pasteurella multocidagenus_speciesisPasteurella multocidaPENSAMP, AMXS
80EUCASTBreakpoints10Pasteurella multocidagenus_speciesisPasteurella multocidaPENIAMP, AMXI
81EUCASTBreakpoints10Pasteurella multocidagenus_speciesisPasteurella multocidaPENRAMP, AMXR
82EUCASTBreakpoints10StaphylococcusgenusisStaphylococcusPEN, FOXSbetalactams_with_inhibitorS
83EUCASTBreakpoints10StaphylococcusgenusisStaphylococcusPEN, FOXR, SOXA, FLCS
84EUCASTBreakpoints10StaphylococcusgenusisStaphylococcusFOXRbetalactamsR
85EUCASTBreakpoints10Staphylococcusgenus_speciesisStaphylococcus saprophyticusAMPSAMX, AMC, PIP, TZPS
86EUCASTBreakpoints10StaphylococcusgenusisStaphylococcusFOXScarbapenems, cephalosporins_except_CAZS
87EUCASTBreakpoints10StaphylococcusgenusisStaphylococcusFOXIcarbapenems, cephalosporins_except_CAZI
88EUCASTBreakpoints10StaphylococcusgenusisStaphylococcusFOXRcarbapenems, cephalosporins_except_CAZR
89EUCASTBreakpoints10StaphylococcusgenusisStaphylococcusNORSCIP, LVX, MFX, OFXS
90EUCASTBreakpoints10StaphylococcusgenusisStaphylococcusERYSAZM, CLR, RXTS
91EUCASTBreakpoints10StaphylococcusgenusisStaphylococcusERYIAZM, CLR, RXTI
92EUCASTBreakpoints10StaphylococcusgenusisStaphylococcusERYRAZM, CLR, RXTR
93EUCASTBreakpoints10StaphylococcusgenusisStaphylococcusTCY-SSDOX, MNOS
94EUCASTBreakpoints10Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENSaminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMCS
95EUCASTBreakpoints10Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENIaminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMCI
96EUCASTBreakpoints10Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENRaminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMCR
97EUCASTBreakpoints10Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNORSMFXS
98EUCASTBreakpoints10Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNORSLVXI
99EUCASTBreakpoints10Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYSAZM, CLR, RXTS
100EUCASTBreakpoints10Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYIAZM, CLR, RXTI
101EUCASTBreakpoints10Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYRAZM, CLR, RXTR
102EUCASTBreakpoints10Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GTCYSDOX, MNOS
103EUCASTBreakpoints10Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaePENSAMP, AMX, AMC, PIP, TZPS
104EUCASTBreakpoints10Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPSAMX, AMC, PIP, TZPS
105EUCASTBreakpoints10Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPIAMX, AMC, PIP, TZPI
106EUCASTBreakpoints10Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPRAMX, AMC, PIP, TZPR
107EUCASTBreakpoints10Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNORSMFXS
108EUCASTBreakpoints10Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNORSLVXI
109EUCASTBreakpoints10Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYSAZM, CLR, RXTS
110EUCASTBreakpoints10Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYIAZM, CLR, RXTI
111EUCASTBreakpoints10Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYRAZM, CLR, RXTR
112EUCASTBreakpoints10Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCYSDOX, MNOS
113EUCASTBreakpoints10Viridans group streptococcigenus_specieslike^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$PENSAMP, AMX, AMC, PIP, TZPS
114EUCASTBreakpoints10Viridans group streptococcigenus_specieslike^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$AMPSAMX, AMC, PIP, TZPS
115EUCASTBreakpoints10Viridans group streptococcigenus_specieslike^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$AMPIAMX, AMC, PIP, TZPI
116EUCASTBreakpoints10Viridans group streptococcigenus_specieslike^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$AMPRAMX, AMC, PIP, TZPR
117EUCASTBreakpoints11Aerococcus sanguinicolagenus_speciesisAerococcus sanguinicolaNORSfluoroquinolonesS
118EUCASTBreakpoints11Aerococcus sanguinicolagenus_speciesisAerococcus sanguinicolaNORIfluoroquinolonesI
119EUCASTBreakpoints11Aerococcus sanguinicolagenus_speciesisAerococcus sanguinicolaNORRfluoroquinolonesR
120EUCASTBreakpoints11Aerococcus sanguinicolagenus_speciesisAerococcus sanguinicolaCIPSLVXS
121EUCASTBreakpoints11Aerococcus sanguinicolagenus_speciesisAerococcus sanguinicolaCIPILVXI
122EUCASTBreakpoints11Aerococcus urinaegenus_speciesisAerococcus sanguinicolaCIPRLVXR
123EUCASTBreakpoints11Aerococcus urinaegenus_speciesisAerococcus urinaeNORSfluoroquinolonesS
124EUCASTBreakpoints11Aerococcus urinaegenus_speciesisAerococcus urinaeNORIfluoroquinolonesI
125EUCASTBreakpoints11Aerococcus urinaegenus_speciesisAerococcus urinaeNORRfluoroquinolonesR
126EUCASTBreakpoints11Aerococcus urinaegenus_speciesisAerococcus urinaeCIPSLVXS
127EUCASTBreakpoints11Aerococcus urinaegenus_speciesisAerococcus urinaeCIPILVXI
128EUCASTBreakpoints11Aerococcus urinaegenus_speciesisAerococcus urinaeCIPRLVXR
129EUCASTBreakpoints11Anaerobic Gram-negativesgenusone_ofBacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, PrevotellaPENSAMP, AMX, PIP, TICS
130EUCASTBreakpoints11Anaerobic Gram-negativesgenusone_ofBacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, PrevotellaPENIAMP, AMX, PIP, TICI
131EUCASTBreakpoints11Anaerobic Gram-negativesgenusone_ofBacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, PrevotellaPENRAMP, AMX, PIP, TICR
132EUCASTBreakpoints11Anaerobic Gram-positivesgenusone_ofActinomyces, Bifidobacterium, Clostridium, Clostridioides, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, PropionibacteriumPENSAMP, AMX, PIP, TICS
133EUCASTBreakpoints11Anaerobic Gram-positivesgenusone_ofActinomyces, Bifidobacterium, Clostridium, Clostridioides, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, PropionibacteriumPENIAMP, AMX, PIP, TICI
134EUCASTBreakpoints11Anaerobic Gram-positivesgenusone_ofActinomyces, Bifidobacterium, Clostridium, Clostridioides, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, PropionibacteriumPENRAMP, AMX, PIP, TICR
135EUCASTBreakpoints11BacillusgenusisBacillusNORSfluoroquinolonesSadded in 11
136EUCASTBreakpoints11BacillusgenusisBacillusNORIfluoroquinolonesIadded in 11
137EUCASTBreakpoints11BacillusgenusisBacillusNORRfluoroquinolonesRadded in 11
138EUCASTBreakpoints11Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCYSDOXS
139EUCASTBreakpoints11Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCYIDOXI
140EUCASTBreakpoints11Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCYRDOXR
141EUCASTBreakpoints11Campylobacter coligenus_speciesisCampylobacter coliERYSAZM, CLRS
142EUCASTBreakpoints11Campylobacter coligenus_speciesisCampylobacter coliERYIAZM, CLRI
143EUCASTBreakpoints11Campylobacter coligenus_speciesisCampylobacter coliERYRAZM, CLRR
144EUCASTBreakpoints11Campylobacter coligenus_speciesisCampylobacter coliTCYSDOXS
145EUCASTBreakpoints11Campylobacter coligenus_speciesisCampylobacter coliTCYIDOXI
146EUCASTBreakpoints11Campylobacter coligenus_speciesisCampylobacter coliTCYRDOXR
147EUCASTBreakpoints11Campylobacter jejunigenus_speciesisCampylobacter jejuniERYSAZM, CLRS
148EUCASTBreakpoints11Campylobacter jejunigenus_speciesisCampylobacter jejuniERYIAZM, CLRI
149EUCASTBreakpoints11Campylobacter jejunigenus_speciesisCampylobacter jejuniERYRAZM, CLRR
150EUCASTBreakpoints11Campylobacter jejunigenus_speciesisCampylobacter jejuniTCYSDOXS
151EUCASTBreakpoints11Campylobacter jejunigenus_speciesisCampylobacter jejuniTCYIDOXI
152EUCASTBreakpoints11Campylobacter jejunigenus_speciesisCampylobacter jejuniTCYRDOXR
153EUCASTBreakpoints11Enterobacterales (Order)orderisEnterobacteralesAMPSAMXS
154EUCASTBreakpoints11Enterobacterales (Order)orderisEnterobacteralesAMPIAMXI
155EUCASTBreakpoints11Enterobacterales (Order)orderisEnterobacteralesAMPRAMXR
156EUCASTBreakpoints11EnterococcusgenusisEnterococcusAMPSAMX, AMC, PIP, TZPS
157EUCASTBreakpoints11EnterococcusgenusisEnterococcusAMPIAMX, AMC, PIP, TZPI
158EUCASTBreakpoints11EnterococcusgenusisEnterococcusAMPRAMX, AMC, PIP, TZPR
159EUCASTBreakpoints11EnterococcusgenusisEnterococcusNORSCIP, LVXS
160EUCASTBreakpoints11EnterococcusgenusisEnterococcusNORICIP, LVXI
161EUCASTBreakpoints11EnterococcusgenusisEnterococcusNORRCIP, LVXR
162EUCASTBreakpoints11Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMPSAMX, PIPS
163EUCASTBreakpoints11Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMPIAMX, PIPI
164EUCASTBreakpoints11Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMPRAMX, PIPR
165EUCASTBreakpoints11Haemophilus influenzaegenus_speciesisHaemophilus influenzaePENSAMP, AMX, AMC, PIP, TZPS
166EUCASTBreakpoints11Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCSTZPS
167EUCASTBreakpoints11Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCITZPI
168EUCASTBreakpoints11Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCRTZPR
169EUCASTBreakpoints11Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNALSCIP, LVX, MFX, OFXS
170EUCASTBreakpoints11Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYSDOX, MNOS
171EUCASTBreakpoints11Kingella kingaegenus_speciesisKingella kingaePENSAMP, AMXS
172EUCASTBreakpoints11Kingella kingaegenus_speciesisKingella kingaePENIAMP, AMXI
173EUCASTBreakpoints11Kingella kingaegenus_speciesisKingella kingaePENRAMP, AMXR
174EUCASTBreakpoints11Kingella kingaegenus_speciesisKingella kingaeERYSAZM, CLRS
175EUCASTBreakpoints11Kingella kingaegenus_speciesisKingella kingaeERYIAZM, CLRI
176EUCASTBreakpoints11Kingella kingaegenus_speciesisKingella kingaeERYRAZM, CLRR
177EUCASTBreakpoints11Kingella kingaegenus_speciesisKingella kingaeTCYSDOXS
178EUCASTBreakpoints11Kingella kingaegenus_speciesisKingella kingaeTCYIDOXI
179EUCASTBreakpoints11Kingella kingaegenus_speciesisKingella kingaeTCYRDOXR
180EUCASTBreakpoints11Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCSTZPS
181EUCASTBreakpoints11Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCITZPI
182EUCASTBreakpoints11Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCRTZPR
183EUCASTBreakpoints11Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNALSCIP, LVX, MFX, OFXS
184EUCASTBreakpoints11Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYSAZM, CLR, RXTS
185EUCASTBreakpoints11Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYIAZM, CLR, RXTI
186EUCASTBreakpoints11Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYRAZM, CLR, RXTR
187EUCASTBreakpoints11Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisTCYSDOX, MNOS
188EUCASTBreakpoints11Pasteurella multocidagenus_speciesisPasteurella multocidaPENSAMP, AMXS
189EUCASTBreakpoints11Pasteurella multocidagenus_speciesisPasteurella multocidaPENIAMP, AMXI
190EUCASTBreakpoints11Pasteurella multocidagenus_speciesisPasteurella multocidaPENRAMP, AMXR
191EUCASTBreakpoints11StaphylococcusgenusisStaphylococcusPEN, FOXSbetalactams_with_inhibitorS
192EUCASTBreakpoints11StaphylococcusgenusisStaphylococcusPEN, FOXR, SOXA, FLCS
193EUCASTBreakpoints11StaphylococcusgenusisStaphylococcusFOXRbetalactamsR
194EUCASTBreakpoints11Staphylococcusgenus_speciesisStaphylococcus saprophyticusAMPSAMX, AMC, PIP, TZPS
195EUCASTBreakpoints11StaphylococcusgenusisStaphylococcusFOXScarbapenems, cephalosporins_except_CAZS
196EUCASTBreakpoints11StaphylococcusgenusisStaphylococcusFOXIcarbapenems, cephalosporins_except_CAZI
197EUCASTBreakpoints11StaphylococcusgenusisStaphylococcusFOXRcarbapenems, cephalosporins_except_CAZR
198EUCASTBreakpoints11StaphylococcusgenusisStaphylococcusNORSCIP, LVX, MFX, OFXS
199EUCASTBreakpoints11StaphylococcusgenusisStaphylococcusERYSAZM, CLR, RXTS
200EUCASTBreakpoints11StaphylococcusgenusisStaphylococcusERYIAZM, CLR, RXTI
201EUCASTBreakpoints11StaphylococcusgenusisStaphylococcusERYRAZM, CLR, RXTR
202EUCASTBreakpoints11StaphylococcusgenusisStaphylococcusTCY-SSDOX, MNOS
203EUCASTBreakpoints11Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSCTX, CROI
204EUCASTBreakpoints11Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENSaminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMCS
205EUCASTBreakpoints11Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENIaminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMCI
206EUCASTBreakpoints11Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENRaminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMCR
207EUCASTBreakpoints11Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNORSMFXS
208EUCASTBreakpoints11Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNORSLVXI
209EUCASTBreakpoints11Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYSAZM, CLR, RXTS
210EUCASTBreakpoints11Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYIAZM, CLR, RXTI
211EUCASTBreakpoints11Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYRAZM, CLR, RXTR
212EUCASTBreakpoints11Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GTCYSDOX, MNOS
213EUCASTBreakpoints11Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaePENSAMP, AMX, AMC, PIP, TZPS
214EUCASTBreakpoints11Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPSAMX, AMC, PIP, TZPS
215EUCASTBreakpoints11Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPIAMX, AMC, PIP, TZPI
216EUCASTBreakpoints11Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPRAMX, AMC, PIP, TZPR
217EUCASTBreakpoints11Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNORSMFXS
218EUCASTBreakpoints11Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNORSLVXI
219EUCASTBreakpoints11Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYSAZM, CLR, RXTS
220EUCASTBreakpoints11Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYIAZM, CLR, RXTI
221EUCASTBreakpoints11Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYRAZM, CLR, RXTR
222EUCASTBreakpoints11Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCYSDOX, MNOS
223EUCASTBreakpoints11Viridans group streptococcigenus_specieslike^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$PENSAMP, AMX, AMC, PIP, TZPS
224EUCASTBreakpoints11Viridans group streptococcigenus_specieslike^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$AMPSAMX, AMC, PIP, TZPS
225EUCASTBreakpoints11Viridans group streptococcigenus_specieslike^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$AMPIAMX, AMC, PIP, TZPI
226EUCASTBreakpoints11Viridans group streptococcigenus_specieslike^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$AMPRAMX, AMC, PIP, TZPR
227EUCASTBreakpoints12Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPSAMXS
228EUCASTBreakpoints12Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPIAMXI
229EUCASTBreakpoints12Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPRAMXR
230EUCASTBreakpoints12Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPSLVXS
231EUCASTBreakpoints12Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPILVXI
232EUCASTBreakpoints12Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPRLVXR
233EUCASTBreakpoints12Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SSfluoroquinolonesS
234EUCASTBreakpoints12Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SIfluoroquinolonesI
235EUCASTBreakpoints12Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SRfluoroquinolonesR
236EUCASTBreakpoints12BacillusgenusisBacillusNOR-SSCIP, LVXI
237EUCASTBreakpoints12BacillusgenusisBacillusNOR-SRCIP, LVXR
238EUCASTBreakpoints12Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCY-SSDOXI
239EUCASTBreakpoints12Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCY-SRDOXR
240EUCASTBreakpoints12Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYSAZM, CLRS
241EUCASTBreakpoints12Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYIAZM, CLRI
242EUCASTBreakpoints12Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYRAZM, CLRR
243EUCASTBreakpoints12Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYSDOXS
244EUCASTBreakpoints12Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYIDOXI
245EUCASTBreakpoints12Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYRDOXR
246EUCASTBreakpoints12Enterobacterales (Order)orderisEnterobacteralesAMPSAMXS
247EUCASTBreakpoints12Enterobacterales (Order)orderisEnterobacteralesAMPIAMXI
248EUCASTBreakpoints12Enterobacterales (Order)orderisEnterobacteralesAMPRAMXR
249EUCASTBreakpoints12Enterobacterales (Order)orderisEnterobacteralesLEXSCZOI
250EUCASTBreakpoints12Enterobacterales (Order)orderisEnterobacteralesCFRSCZOI
251EUCASTBreakpoints12Enterobacterales (Order)genusisSalmonellaPEF-SSCIPS
252EUCASTBreakpoints12Enterobacterales (Order)genusisSalmonellaPEF-SICIPI
253EUCASTBreakpoints12Enterobacterales (Order)genusisSalmonellaPEF-SRCIPR
254EUCASTBreakpoints12Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYSDOXS
255EUCASTBreakpoints12Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYIDOXI
256EUCASTBreakpoints12Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYRDOXR
257EUCASTBreakpoints12EnterococcusgenusisEnterococcusAMPSAMP, SAM, AMX, AMC, PIP, TZPS
258EUCASTBreakpoints12EnterococcusgenusisEnterococcusAMPIAMP, SAM, AMX, AMC, PIP, TZPI
259EUCASTBreakpoints12EnterococcusgenusisEnterococcusAMPRAMP, SAM, AMX, AMC, PIP, TZPR
260EUCASTBreakpoints12EnterococcusgenusisEnterococcusNOR-SSCIP, LVXS
261EUCASTBreakpoints12EnterococcusgenusisEnterococcusNOR-SICIP, LVXI
262EUCASTBreakpoints12EnterococcusgenusisEnterococcusNOR-SRCIP, LVXR
263EUCASTBreakpoints12Haemophilus influenzaegenus_speciesisHaemophilus influenzaePEN-S, BLA-SR, RAMP, AMX, PIPR
264EUCASTBreakpoints12Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCSSAMS
265EUCASTBreakpoints12Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCISAMI
266EUCASTBreakpoints12Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCRSAMR
267EUCASTBreakpoints12Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SSCIP, LVX, MFX, OFXS
268EUCASTBreakpoints12Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SICIP, LVX, MFX, OFXI
269EUCASTBreakpoints12Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SRCIP, LVX, MFX, OFXR
270EUCASTBreakpoints12Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYSDOX, MNOS
271EUCASTBreakpoints12Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYRDOX, MNOR
272EUCASTBreakpoints12Kingella kingaegenus_speciesisKingella kingaeBLA-SRPEN, AMP, AMXR
273EUCASTBreakpoints12Kingella kingaegenus_speciesisKingella kingaePENSAMP, AMXS
274EUCASTBreakpoints12Kingella kingaegenus_speciesisKingella kingaePENIAMP, AMXI
275EUCASTBreakpoints12Kingella kingaegenus_speciesisKingella kingaePENRAMP, AMXR
276EUCASTBreakpoints12Kingella kingaegenus_speciesisKingella kingaeERYSAZM, CLRS
277EUCASTBreakpoints12Kingella kingaegenus_speciesisKingella kingaeERYIAZM, CLRI
278EUCASTBreakpoints12Kingella kingaegenus_speciesisKingella kingaeERYRAZM, CLRR
279EUCASTBreakpoints12Kingella kingaegenus_speciesisKingella kingaeTCYSDOXS
280EUCASTBreakpoints12Kingella kingaegenus_speciesisKingella kingaeTCYRDOXR
281EUCASTBreakpoints12Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisBLA-SRAMP, AMX, APL, APX, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CLO, CRB, CRN, DIC, EPC, FLC, HET, LEN, MEC, MET, MEZ, MTM, NAF, OXA, PEN, PHE, PHN, PIP, PME, PNM, PRB, PRC, PRP, PVM, SBC, SLT6, SRX, TAL, TEM, TICRpenicillins()[!penicillins() %in% betalactams_with_inhibitor()]
282EUCASTBreakpoints12Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCSTZPS
283EUCASTBreakpoints12Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCITZPI
284EUCASTBreakpoints12Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCRTZPR
285EUCASTBreakpoints12Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNAL-SSCIP, LVX, MFX, OFXS
286EUCASTBreakpoints12Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNAL-SRCIP, LVX, MFX, OFXR
287EUCASTBreakpoints12Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYSAZM, CLR, RXTS
288EUCASTBreakpoints12Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYRAZM, CLR, RXTR
289EUCASTBreakpoints12Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisTCYSDOX, MNOS
290EUCASTBreakpoints12Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisTCYRDOX, MNOR
291EUCASTBreakpoints12Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-SRAMP, AMXR
292EUCASTBreakpoints12Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, SAMP, AMXS
293EUCASTBreakpoints12Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, IAMP, AMXI
294EUCASTBreakpoints12Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, RAMP, AMXR
295EUCASTBreakpoints12Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SSMNOS
296EUCASTBreakpoints12Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SIMNOI
297EUCASTBreakpoints12Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SRMNOR
298EUCASTBreakpoints12Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SSDOXS
299EUCASTBreakpoints12Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SIDOXI
300EUCASTBreakpoints12Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SRDOXR
301EUCASTBreakpoints12Pasteurella multocidagenus_speciesisPasteurella multocidaPENSAMP, AMXS
302EUCASTBreakpoints12Pasteurella multocidagenus_speciesisPasteurella multocidaPENIAMP, AMXI
303EUCASTBreakpoints12Pasteurella multocidagenus_speciesisPasteurella multocidaPENRAMP, AMXR
304EUCASTBreakpoints12Pasteurella multocidagenus_speciesisPasteurella multocidaNAL-SSCIP, LVXS
305EUCASTBreakpoints12Pasteurella multocidagenus_speciesisPasteurella multocidaNAL-SRCIP, LVXR
306EUCASTBreakpoints12Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SRpenicillinsRSee last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins
307EUCASTBreakpoints12Staphylococcusgenus_speciesisStaphylococcus aureusPEN, FOX-SS, SpenicillinsS
308EUCASTBreakpoints12Staphylococcusgenus_speciesisStaphylococcus aureusPEN, FOX-SR, Sbetalactams_with_inhibitor, isoxazolylpenicillins, NAFS
309EUCASTBreakpoints12StaphylococcusgenusisStaphylococcusFOX-SRPEN, PHN, AMP, AMX, PIP, TICR
310EUCASTBreakpoints12Staphylococcusgenus_speciesisStaphylococcus saprophyticusAMPSAMP, SAM, AMX, AMC, PIP, TZPS
311EUCASTBreakpoints12Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SRPEN, PHN, AMP, AMX, PIP, TICR
312EUCASTBreakpoints12Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSCPTS
313EUCASTBreakpoints12Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSBPRS
314EUCASTBreakpoints12StaphylococcusgenusisStaphylococcusFOX-SScarbapenemsS
315EUCASTBreakpoints12StaphylococcusgenusisStaphylococcusFOX-SIcarbapenemsI
316EUCASTBreakpoints12StaphylococcusgenusisStaphylococcusFOX-SRcarbapenemsR
317EUCASTBreakpoints12Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SScarbapenemsSNot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
318EUCASTBreakpoints12Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SIcarbapenemsINot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
319EUCASTBreakpoints12Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SRcarbapenemsRNot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
320EUCASTBreakpoints12StaphylococcusgenusisStaphylococcusNOR-SSMFXS
321EUCASTBreakpoints12StaphylococcusgenusisStaphylococcusNOR-SSCIP, LVXI
322EUCASTBreakpoints12Staphylococcusgenus_speciesisStaphylococcus aureusVANSDAL, ORIS
323EUCASTBreakpoints12Staphylococcusgenus_speciesisStaphylococcus aureusFOX-S, VANR, STLVSMRSA isolates are in this file safely denoted as FOX resistant
324EUCASTBreakpoints12StaphylococcusgenusisStaphylococcusERYSAZM, CLR, RXTS
325EUCASTBreakpoints12StaphylococcusgenusisStaphylococcusTCY-SSDOX, MNOS
326EUCASTBreakpoints12Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSCTX, CROI
327EUCASTBreakpoints12StaphylococcusgenusisStaphylococcusTCY-SRDOX, MNOR
328EUCASTBreakpoints12StaphylococcusgenusisStaphylococcusERYRAZM, CLR, RXTR
329EUCASTBreakpoints12StaphylococcusgenusisStaphylococcusNOR-SRCIP, MFX, LVXR
330EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENSpenicillinsS
331EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENIpenicillinsI
332EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENRpenicillinsR
333EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENScephalosporinsS
334EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENIcephalosporinsI
335EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENRcephalosporinsR
336EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENScarbapenemsS
337EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENIcarbapenemsI
338EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENRcarbapenemsR
339EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SSMFXSdoes not explicitly state that it is for other fluoroquinolones
340EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SSLVXIdoes not explicitly state that it is for other fluoroquinolones
341EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SRMFX, LVXRdoes not explicitly state that it is for other fluoroquinolones
342EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GVANSDAL, ORIS
343EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYSAZM, CLR, RXTS
344EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYRAZM, CLR, RXTR
345EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GTCY-SSDOX, MNOS
346EUCASTBreakpoints12Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GTCY-SRDOX, MNOR
347EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeOXA-SSCECI
348EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaePENSCECI
349EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeOXA-SRPEN, PHNRfrom flowchart: when OXA < 20 or PEN > 0.06
350EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaePENRPHNRfrom flowchart: when OXA < 20 or PEN > 0.06
351EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPSAMX, AMC, SAM, PIP, TZPS
352EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPIAMX, AMC, SAM, PIP, TZPI
353EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPRAMX, AMC, SAM, PIP, TZPR
354EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SSMFXSdoes not explicitly state that it is for other fluoroquinolones
355EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SSLVXIdoes not explicitly state that it is for other fluoroquinolones
356EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SRMFX, LVXRdoes not explicitly state that it is for other fluoroquinolones
357EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYSAZM, CLR, RXTS
358EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYRAZM, CLR, RXTR
359EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCY-SSDOX, MNOS
360EUCASTBreakpoints12Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCY-SRDOX, MNOR
361EUCASTBreakpoints12Vibrio spp.genusisVibrioPEF-SSCIP, LVXS
362EUCASTBreakpoints12Vibrio spp.genusisVibrioPEF-SICIP, LVXI
363EUCASTBreakpoints12Vibrio spp.genusisVibrioPEF-SRCIP, LVXR
364EUCASTBreakpoints12Vibrio spp.genusisVibrioERYSAZMS
365EUCASTBreakpoints12Vibrio spp.genusisVibrioERYIAZMI
366EUCASTBreakpoints12Vibrio spp.genusisVibrioERYRAZMR
367EUCASTBreakpoints12Vibrio spp.genusisVibrioTCY-SSDOXS
368EUCASTBreakpoints12Vibrio spp.genusisVibrioTCY-SIDOXI
369EUCASTBreakpoints12Vibrio spp.genusisVibrioTCY-SRDOXR
370EUCASTBreakpoints14Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPSAMXS
371EUCASTBreakpoints14Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPIAMXI
372EUCASTBreakpoints14Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPRAMXR
373EUCASTBreakpoints14Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPSLVXS
374EUCASTBreakpoints14Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPILVXI
375EUCASTBreakpoints14Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPRLVXR
376EUCASTBreakpoints14Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SSfluoroquinolonesS
377EUCASTBreakpoints14Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SIfluoroquinolonesI
378EUCASTBreakpoints14Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SRfluoroquinolonesR
379EUCASTBreakpoints14Anaerobic bacteriagenusisPrevotellaAMPSAMXS
380EUCASTBreakpoints14Anaerobic bacteriagenusisPrevotellaAMPIAMXI
381EUCASTBreakpoints14Anaerobic bacteriagenusisPrevotellaAMPRAMXR
382EUCASTBreakpoints14Anaerobic bacteriagenus_speciesisFusobacterium necrophorumAMPSAMXS
383EUCASTBreakpoints14Anaerobic bacteriagenus_speciesisFusobacterium necrophorumAMPIAMXI
384EUCASTBreakpoints14Anaerobic bacteriagenus_speciesisFusobacterium necrophorumAMPRAMXR
385EUCASTBreakpoints14Anaerobic bacteriagenus_speciesisClostridium perfringensAMPSAMXS
386EUCASTBreakpoints14Anaerobic bacteriagenus_speciesisClostridium perfringensAMPIAMXI
387EUCASTBreakpoints14Anaerobic bacteriagenus_speciesisClostridium perfringensAMPRAMXR
388EUCASTBreakpoints14Anaerobic bacteriagenus_speciesisCutibacterium acnesAMPSAMXS
389EUCASTBreakpoints14Anaerobic bacteriagenus_speciesisCutibacterium acnesAMPIAMXI
390EUCASTBreakpoints14Anaerobic bacteriagenus_speciesisCutibacterium acnesAMPRAMXR
391EUCASTBreakpoints14Anaerobic bacteriagenus_speciesisCutibacterium acnesCTXSCROS
392EUCASTBreakpoints14Anaerobic bacteriagenus_speciesisCutibacterium acnesCTXICROI
393EUCASTBreakpoints14Anaerobic bacteriagenus_speciesisCutibacterium acnesCTXRCROR
394EUCASTBreakpoints14BacillusgenusisBacillusNOR-SSCIP, LVXI
395EUCASTBreakpoints14BacillusgenusisBacillusNOR-SRCIP, LVXR
396EUCASTBreakpoints14Bacillus anthracisgenus_speciesisBacillus anthracisPENIAMXS
397EUCASTBreakpoints14Bacillus anthracisgenus_speciesisBacillus anthracisPENRAMXR
398EUCASTBreakpoints14Bacillus anthracisgenus_speciesisBacillus anthracisTCY-SSDOXS
399EUCASTBreakpoints14Bacillus anthracisgenus_speciesisBacillus anthracisTCY-SRDOXR
400EUCASTBreakpoints14Brucella melitensisgenus_speciesisBrucella melitensisTCY-SSDOXS
401EUCASTBreakpoints14Brucella melitensisgenus_speciesisBrucella melitensisTCY-SRDOXR
402EUCASTBreakpoints14Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCY-SSDOXI
403EUCASTBreakpoints14Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCY-SRDOXR
404EUCASTBreakpoints14Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYSAZM, CLRS
405EUCASTBreakpoints14Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYIAZM, CLRI
406EUCASTBreakpoints14Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYRAZM, CLRR
407EUCASTBreakpoints14Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYSDOXS
408EUCASTBreakpoints14Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYIDOXI
409EUCASTBreakpoints14Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYRDOXR
410EUCASTBreakpoints14Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENIAMXS
411EUCASTBreakpoints14Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRAMXR
412EUCASTBreakpoints14Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENICTXI
413EUCASTBreakpoints14Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRCTXR
414EUCASTBreakpoints14Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENIMEMS
415EUCASTBreakpoints14Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRMEMR
416EUCASTBreakpoints14Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransTCYSDOXS
417EUCASTBreakpoints14Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransTCYRDOXR
418EUCASTBreakpoints14Enterobacterales (Order)orderisEnterobacteralesAMPSAMXS
419EUCASTBreakpoints14Enterobacterales (Order)orderisEnterobacteralesAMPIAMXI
420EUCASTBreakpoints14Enterobacterales (Order)orderisEnterobacteralesAMPRAMXR
421EUCASTBreakpoints14Enterobacterales (Order)orderisEnterobacteralesLEXSCZOI
422EUCASTBreakpoints14Enterobacterales (Order)orderisEnterobacteralesCFRSCZOI
423EUCASTBreakpoints14Enterobacterales (Order)orderisEnterobacteralesPEF-SSfluoroquinolonesS
424EUCASTBreakpoints14Enterobacterales (Order)orderisEnterobacteralesPEF-SIfluoroquinolonesI
425EUCASTBreakpoints14Enterobacterales (Order)orderisEnterobacteralesPEF-SRfluoroquinolonesR
426EUCASTBreakpoints14Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYSDOXS
427EUCASTBreakpoints14Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYIDOXI
428EUCASTBreakpoints14Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYRDOXR
429EUCASTBreakpoints14EnterococcusgenusisEnterococcusAMPSAMP, SAM, AMX, AMC, PIP, TZPS
430EUCASTBreakpoints14EnterococcusgenusisEnterococcusAMPIAMP, SAM, AMX, AMC, PIP, TZPI
431EUCASTBreakpoints14EnterococcusgenusisEnterococcusAMPRAMP, SAM, AMX, AMC, PIP, TZPR
432EUCASTBreakpoints14EnterococcusgenusisEnterococcusNOR-SSCIP, LVXS
433EUCASTBreakpoints14EnterococcusgenusisEnterococcusNOR-SICIP, LVXI
434EUCASTBreakpoints14EnterococcusgenusisEnterococcusNOR-SRCIP, LVXR
435EUCASTBreakpoints14Haemophilus influenzaegenus_speciesisHaemophilus influenzaePEN-S, BLA-SR, RAMP, AMX, PIPR
436EUCASTBreakpoints14Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCSSAMS
437EUCASTBreakpoints14Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCISAMI
438EUCASTBreakpoints14Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCRSAMR
439EUCASTBreakpoints14Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SSCIP, LVX, MFX, OFXS
440EUCASTBreakpoints14Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SICIP, LVX, MFX, OFXI
441EUCASTBreakpoints14Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SRCIP, LVX, MFX, OFXR
442EUCASTBreakpoints14Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYSDOX, MNOS
443EUCASTBreakpoints14Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYRDOX, MNOR
444EUCASTBreakpoints14Kingella kingaegenus_speciesisKingella kingaeBLA-SRPEN, AMP, AMXR
445EUCASTBreakpoints14Kingella kingaegenus_speciesisKingella kingaePENSAMP, AMXS
446EUCASTBreakpoints14Kingella kingaegenus_speciesisKingella kingaePENIAMP, AMXI
447EUCASTBreakpoints14Kingella kingaegenus_speciesisKingella kingaePENRAMP, AMXR
448EUCASTBreakpoints14Kingella kingaegenus_speciesisKingella kingaeERYSAZM, CLRS
449EUCASTBreakpoints14Kingella kingaegenus_speciesisKingella kingaeERYIAZM, CLRI
450EUCASTBreakpoints14Kingella kingaegenus_speciesisKingella kingaeERYRAZM, CLRR
451EUCASTBreakpoints14Kingella kingaegenus_speciesisKingella kingaeTCYSDOXS
452EUCASTBreakpoints14Kingella kingaegenus_speciesisKingella kingaeTCYRDOXR
453EUCASTBreakpoints14Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisBLA-SRAMP, AMX, APL, APX, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CLO, CRB, CRN, DIC, EPC, FLC, HET, LEN, MEC, MET, MEZ, MTM, NAF, OXA, PEN, PHE, PHN, PIP, PME, PNM, PRB, PRC, PRP, PVM, SBC, SLT6, SRX, TAL, TEM, TICRpenicillins()[!penicillins() %in% betalactams_with_inhibitor()]
454EUCASTBreakpoints14Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCSTZPS
455EUCASTBreakpoints14Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCITZPI
456EUCASTBreakpoints14Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCRTZPR
457EUCASTBreakpoints14Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNAL-SSCIP, LVX, MFX, OFXS
458EUCASTBreakpoints14Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNAL-SRCIP, LVX, MFX, OFXR
459EUCASTBreakpoints14Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYSAZM, CLR, RXTS
460EUCASTBreakpoints14Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYRAZM, CLR, RXTR
461EUCASTBreakpoints14Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisTCYSDOX, MNOS
462EUCASTBreakpoints14Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisTCYRDOX, MNOR
463EUCASTBreakpoints14Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-SRAMP, AMXR
464EUCASTBreakpoints14Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, SAMP, AMXS
465EUCASTBreakpoints14Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, IAMP, AMXI
466EUCASTBreakpoints14Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, RAMP, AMXR
467EUCASTBreakpoints14Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SSMNOS
468EUCASTBreakpoints14Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SIMNOI
469EUCASTBreakpoints14Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SRMNOR
470EUCASTBreakpoints14Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SSDOXS
471EUCASTBreakpoints14Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SIDOXI
472EUCASTBreakpoints14Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SRDOXR
473EUCASTBreakpoints14Pasteurella multocidagenus_speciesisPasteurella multocidaPENSAMP, AMXS
474EUCASTBreakpoints14Pasteurella multocidagenus_speciesisPasteurella multocidaPENIAMP, AMXI
475EUCASTBreakpoints14Pasteurella multocidagenus_speciesisPasteurella multocidaPENRAMP, AMXR
476EUCASTBreakpoints14Pasteurella multocidagenus_speciesisPasteurella multocidaNAL-SSCIP, LVXS
477EUCASTBreakpoints14Pasteurella multocidagenus_speciesisPasteurella multocidaNAL-SRCIP, LVXR
478EUCASTBreakpoints14Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SRpenicillinsRSee last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins
479EUCASTBreakpoints14Staphylococcusgenus_speciesisStaphylococcus aureusPEN, FOX-SS, SpenicillinsS
480EUCASTBreakpoints14Staphylococcusgenus_speciesisStaphylococcus aureusPEN, FOX-SR, Sbetalactams_with_inhibitor, isoxazolylpenicillins, NAFS
481EUCASTBreakpoints14StaphylococcusgenusisStaphylococcusFOX-SRPEN, PHN, AMP, AMX, PIP, TICR
482EUCASTBreakpoints14Staphylococcusgenus_speciesisStaphylococcus saprophyticusAMPSAMP, SAM, AMX, AMC, PIP, TZPS
483EUCASTBreakpoints14Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SRPEN, PHN, AMP, AMX, PIP, TICR
484EUCASTBreakpoints14Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSCPTS
485EUCASTBreakpoints14Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSBPRS
486EUCASTBreakpoints14StaphylococcusgenusisStaphylococcusFOX-SScarbapenemsS
487EUCASTBreakpoints14StaphylococcusgenusisStaphylococcusFOX-SIcarbapenemsI
488EUCASTBreakpoints14StaphylococcusgenusisStaphylococcusFOX-SRcarbapenemsR
489EUCASTBreakpoints14Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SScarbapenemsSNot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
490EUCASTBreakpoints14Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SIcarbapenemsINot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
491EUCASTBreakpoints14Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SRcarbapenemsRNot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
492EUCASTBreakpoints14StaphylococcusgenusisStaphylococcusNOR-SSMFXS
493EUCASTBreakpoints14StaphylococcusgenusisStaphylococcusNOR-SSCIP, LVXI
494EUCASTBreakpoints14Staphylococcusgenus_speciesisStaphylococcus coagulase-negativeVAN, TECS, SDALS
495EUCASTBreakpoints14Staphylococcusgenus_speciesisStaphylococcus aureusVANSDAL, ORIS
496EUCASTBreakpoints14Staphylococcusgenus_speciesisStaphylococcus aureusFOX-S, VANR, STLVSMRSA isolates are in this file safely denoted as FOX resistant
497EUCASTBreakpoints14StaphylococcusgenusisStaphylococcusERYSAZM, CLR, RXTS
498EUCASTBreakpoints14StaphylococcusgenusisStaphylococcusTCYSDOX, MNOS
499EUCASTBreakpoints14Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSCTX, CROI
500EUCASTBreakpoints14StaphylococcusgenusisStaphylococcusTCYRDOX, MNOR
501EUCASTBreakpoints14StaphylococcusgenusisStaphylococcusERYRAZM, CLR, RXTR
502EUCASTBreakpoints14StaphylococcusgenusisStaphylococcusNOR-SRCIP, MFX, LVXR
503EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENSpenicillinsS
504EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENIpenicillinsI
505EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENRpenicillinsR
506EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENScephalosporinsS
507EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENIcephalosporinsI
508EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENRcephalosporinsR
509EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENScarbapenemsS
510EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENIcarbapenemsI
511EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENRcarbapenemsR
512EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SSMFXSdoes not explicitly state that it is for other fluoroquinolones
513EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SSLVXIdoes not explicitly state that it is for other fluoroquinolones
514EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SRMFX, LVXRdoes not explicitly state that it is for other fluoroquinolones
515EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GVANSDAL, ORIS
516EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYSAZM, CLR, RXTS
517EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYRAZM, CLR, RXTR
518EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GTCY-SSDOX, MNOS
519EUCASTBreakpoints14Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GTCY-SRDOX, MNOR
520EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeOXA-SSCECI
521EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaePENSCECI
522EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeOXA-SRPEN, PHNRfrom flowchart: when OXA < 20 or PEN > 0.06
523EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaePENRPHNRfrom flowchart: when OXA < 20 or PEN > 0.06
524EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPSAMX, AMC, SAM, PIP, TZPS
525EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPIAMX, AMC, SAM, PIP, TZPI
526EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPRAMX, AMC, SAM, PIP, TZPR
527EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SSMFXSdoes not explicitly state that it is for other fluoroquinolones
528EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SSLVXIdoes not explicitly state that it is for other fluoroquinolones
529EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SRMFX, LVXRdoes not explicitly state that it is for other fluoroquinolones
530EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYSAZM, CLR, RXTS
531EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYRAZM, CLR, RXTR
532EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCY-SSDOX, MNOS
533EUCASTBreakpoints14Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCY-SRDOX, MNOR
534EUCASTBreakpoints14Vibrio spp.genusisVibrioPEF-SSCIP, LVXS
535EUCASTBreakpoints14Vibrio spp.genusisVibrioPEF-SICIP, LVXI
536EUCASTBreakpoints14Vibrio spp.genusisVibrioPEF-SRCIP, LVXR
537EUCASTBreakpoints14Vibrio spp.genusisVibrioERYSAZMS
538EUCASTBreakpoints14Vibrio spp.genusisVibrioERYIAZMI
539EUCASTBreakpoints14Vibrio spp.genusisVibrioERYRAZMR
540EUCASTBreakpoints14Vibrio spp.genusisVibrioTCY-SSDOXS
541EUCASTBreakpoints14Vibrio spp.genusisVibrioTCY-SIDOXI
542EUCASTBreakpoints14Vibrio spp.genusisVibrioTCY-SRDOXR
543EUCASTBreakpoints14Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)PEN-SSAMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZPSwill be expanded in eucast_rules()
544EUCASTBreakpoints14Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)PEN-SRAMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZPRwill be expanded in eucast_rules()
545EUCASTBreakpoints14Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)AMPSAMX, AMC, SAM, PIP, TZPSwill be expanded in eucast_rules()
546EUCASTBreakpoints14Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)AMPIAMX, AMC, SAM, PIP, TZPIwill be expanded in eucast_rules()
547EUCASTBreakpoints14Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)AMPRAMX, AMC, SAM, PIP, TZPRwill be expanded in eucast_rules()
548EUCASTBreakpoints15Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPSAMXS
549EUCASTBreakpoints15Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPIAMXI
550EUCASTBreakpoints15Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPRAMXR
551EUCASTBreakpoints15Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPSLVXS
552EUCASTBreakpoints15Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPILVXI
553EUCASTBreakpoints15Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPRLVXR
554EUCASTBreakpoints15Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SSfluoroquinolonesS
555EUCASTBreakpoints15Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SIfluoroquinolonesI
556EUCASTBreakpoints15Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SRfluoroquinolonesR
557EUCASTBreakpoints15Anaerobic bacteriagenusisPrevotellaAMPSAMXS
558EUCASTBreakpoints15Anaerobic bacteriagenusisPrevotellaAMPIAMXI
559EUCASTBreakpoints15Anaerobic bacteriagenusisPrevotellaAMPRAMXR
560EUCASTBreakpoints15Anaerobic bacteriagenus_speciesisFusobacterium necrophorumAMPSAMXS
561EUCASTBreakpoints15Anaerobic bacteriagenus_speciesisFusobacterium necrophorumAMPIAMXI
562EUCASTBreakpoints15Anaerobic bacteriagenus_speciesisFusobacterium necrophorumAMPRAMXR
563EUCASTBreakpoints15Anaerobic bacteriagenus_speciesisClostridium perfringensAMPSAMXS
564EUCASTBreakpoints15Anaerobic bacteriagenus_speciesisClostridium perfringensAMPIAMXI
565EUCASTBreakpoints15Anaerobic bacteriagenus_speciesisClostridium perfringensAMPRAMXR
566EUCASTBreakpoints15Anaerobic bacteriagenus_speciesisCutibacterium acnesAMPSAMXS
567EUCASTBreakpoints15Anaerobic bacteriagenus_speciesisCutibacterium acnesAMPIAMXI
568EUCASTBreakpoints15Anaerobic bacteriagenus_speciesisCutibacterium acnesAMPRAMXR
569EUCASTBreakpoints15Anaerobic bacteriagenus_speciesisCutibacterium acnesCTXSCROS
570EUCASTBreakpoints15Anaerobic bacteriagenus_speciesisCutibacterium acnesCTXICROI
571EUCASTBreakpoints15Anaerobic bacteriagenus_speciesisCutibacterium acnesCTXRCROR
572EUCASTBreakpoints15BacillusgenusisBacillusNOR-SSCIP, LVXI
573EUCASTBreakpoints15BacillusgenusisBacillusNOR-SRCIP, LVXR
574EUCASTBreakpoints15Bacillus anthracisgenus_speciesisBacillus anthracisPENIAMXS
575EUCASTBreakpoints15Bacillus anthracisgenus_speciesisBacillus anthracisPENRAMXR
576EUCASTBreakpoints15Bacillus anthracisgenus_speciesisBacillus anthracisTCY-SSDOXS
577EUCASTBreakpoints15Bacillus anthracisgenus_speciesisBacillus anthracisTCY-SRDOXR
578EUCASTBreakpoints15Brucella melitensisgenus_speciesisBrucella melitensisTCY-SSDOXS
579EUCASTBreakpoints15Brucella melitensisgenus_speciesisBrucella melitensisTCY-SRDOXR
580EUCASTBreakpoints15Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCY-SSDOXI
581EUCASTBreakpoints15Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCY-SRDOXR
582EUCASTBreakpoints15Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYSAZM, CLRS
583EUCASTBreakpoints15Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYIAZM, CLRI
584EUCASTBreakpoints15Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYRAZM, CLRR
585EUCASTBreakpoints15Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYSDOXS
586EUCASTBreakpoints15Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYIDOXI
587EUCASTBreakpoints15Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYRDOXR
588EUCASTBreakpoints15Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENIAMXS
589EUCASTBreakpoints15Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRAMXR
590EUCASTBreakpoints15Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENICTXI
591EUCASTBreakpoints15Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRCTXR
592EUCASTBreakpoints15Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENIMEMS
593EUCASTBreakpoints15Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRMEMR
594EUCASTBreakpoints15Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransTCYSDOXS
595EUCASTBreakpoints15Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransTCYRDOXR
596EUCASTBreakpoints15Enterobacterales (Order)orderisEnterobacteralesAMPSAMXS
597EUCASTBreakpoints15Enterobacterales (Order)orderisEnterobacteralesAMPIAMXI
598EUCASTBreakpoints15Enterobacterales (Order)orderisEnterobacteralesAMPRAMXR
599EUCASTBreakpoints15Enterobacterales (Order)orderisEnterobacteralesLEXSCZOI
600EUCASTBreakpoints15Enterobacterales (Order)orderisEnterobacteralesCFRSCZOI
601EUCASTBreakpoints15Enterobacterales (Order)orderisEnterobacteralesPEF-SSfluoroquinolonesS
602EUCASTBreakpoints15Enterobacterales (Order)orderisEnterobacteralesPEF-SIfluoroquinolonesI
603EUCASTBreakpoints15Enterobacterales (Order)orderisEnterobacteralesPEF-SRfluoroquinolonesR
604EUCASTBreakpoints15Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYSDOXS
605EUCASTBreakpoints15Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYIDOXI
606EUCASTBreakpoints15Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYRDOXR
607EUCASTBreakpoints15EnterococcusgenusisEnterococcusAMPSAMP, SAM, AMXS
608EUCASTBreakpoints15EnterococcusgenusisEnterococcusAMPIAMP, SAM, AMXI
609EUCASTBreakpoints15EnterococcusgenusisEnterococcusAMPRAMP, SAM, AMXR
610EUCASTBreakpoints15EnterococcusgenusisEnterococcusAMPRAMX, AMCR
611EUCASTBreakpoints15EnterococcusgenusisEnterococcusNOR-SSCIP, LVXS
612EUCASTBreakpoints15EnterococcusgenusisEnterococcusNOR-SICIP, LVXI
613EUCASTBreakpoints15EnterococcusgenusisEnterococcusNOR-SRCIP, LVXR
614EUCASTBreakpoints15Haemophilus influenzaegenus_speciesisHaemophilus influenzaePEN-S, BLA-SR, RAMP, AMX, PIPR
615EUCASTBreakpoints15Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCSSAMS
616EUCASTBreakpoints15Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCISAMI
617EUCASTBreakpoints15Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCRSAMR
618EUCASTBreakpoints15Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SSCIP, LVX, MFX, OFXS
619EUCASTBreakpoints15Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SRCIP, LVX, MFX, OFXR
620EUCASTBreakpoints15Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYSDOX, MNOS
621EUCASTBreakpoints15Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYRDOX, MNOR
622EUCASTBreakpoints15Kingella kingaegenus_speciesisKingella kingaeBLA-SRPEN, AMP, AMXR
623EUCASTBreakpoints15Kingella kingaegenus_speciesisKingella kingaePENSAMP, AMXS
624EUCASTBreakpoints15Kingella kingaegenus_speciesisKingella kingaePENIAMP, AMXI
625EUCASTBreakpoints15Kingella kingaegenus_speciesisKingella kingaePENRAMP, AMXR
626EUCASTBreakpoints15Kingella kingaegenus_speciesisKingella kingaeERYSAZM, CLRS
627EUCASTBreakpoints15Kingella kingaegenus_speciesisKingella kingaeERYIAZM, CLRI
628EUCASTBreakpoints15Kingella kingaegenus_speciesisKingella kingaeERYRAZM, CLRR
629EUCASTBreakpoints15Kingella kingaegenus_speciesisKingella kingaeTCYSDOXS
630EUCASTBreakpoints15Kingella kingaegenus_speciesisKingella kingaeTCYRDOXR
631EUCASTBreakpoints15Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisBLA-SRAMP, AMX, APL, APX, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CLO, CRB, CRN, DIC, EPC, FLC, HET, LEN, MEC, MET, MEZ, MTM, NAF, OXA, PEN, PHE, PHN, PIP, PME, PNM, PRB, PRC, PRP, PVM, SBC, SLT6, SRX, TAL, TEM, TICRpenicillins()[!penicillins() %in% betalactams_with_inhibitor()]
632EUCASTBreakpoints15Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCSTZPS
633EUCASTBreakpoints15Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCITZPI
634EUCASTBreakpoints15Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCRTZPR
635EUCASTBreakpoints15Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNAL-SSCIP, LVX, MFX, OFXS
636EUCASTBreakpoints15Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNAL-SRCIP, LVX, MFX, OFXR
637EUCASTBreakpoints15Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYSAZM, CLR, RXTS
638EUCASTBreakpoints15Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYRAZM, CLR, RXTR
639EUCASTBreakpoints15Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisTCYSDOX, MNOS
640EUCASTBreakpoints15Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisTCYRDOX, MNOR
641EUCASTBreakpoints15Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-SRAMP, AMXR
642EUCASTBreakpoints15Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, SAMP, AMXS
643EUCASTBreakpoints15Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, IAMP, AMXI
644EUCASTBreakpoints15Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, RAMP, AMXR
645EUCASTBreakpoints15Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SSMNOS
646EUCASTBreakpoints15Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SIMNOI
647EUCASTBreakpoints15Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SRMNOR
648EUCASTBreakpoints15Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SSDOXS
649EUCASTBreakpoints15Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SIDOXI
650EUCASTBreakpoints15Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SRDOXR
651EUCASTBreakpoints15Pasteurella multocidagenus_speciesisPasteurella multocidaPENSAMP, AMXS
652EUCASTBreakpoints15Pasteurella multocidagenus_speciesisPasteurella multocidaPENIAMP, AMXI
653EUCASTBreakpoints15Pasteurella multocidagenus_speciesisPasteurella multocidaPENRAMP, AMXR
654EUCASTBreakpoints15Pasteurella multocidagenus_speciesisPasteurella multocidaNAL-SSCIP, LVXS
655EUCASTBreakpoints15Pasteurella multocidagenus_speciesisPasteurella multocidaNAL-SRCIP, LVXR
656EUCASTBreakpoints15Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SRpenicillinsRSee last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins
657EUCASTBreakpoints15Staphylococcusgenus_speciesisStaphylococcus aureusPEN, FOX-SS, SpenicillinsS
658EUCASTBreakpoints15Staphylococcusgenus_speciesisStaphylococcus aureusPEN, FOX-SR, Sbetalactams_with_inhibitor, isoxazolylpenicillins, NAFS
659EUCASTBreakpoints15StaphylococcusgenusisStaphylococcusFOX-SRPEN, PHN, AMP, AMX, PIP, TICR
660EUCASTBreakpoints15Staphylococcusgenus_speciesisStaphylococcus saprophyticusAMPSAMP, SAM, AMX, AMC, PIP, TZPS
661EUCASTBreakpoints15Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SRPEN, PHN, AMP, AMX, PIP, TICR
662EUCASTBreakpoints15Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSCPTS
663EUCASTBreakpoints15Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSBPRS
664EUCASTBreakpoints15StaphylococcusgenusisStaphylococcusFOX-SScarbapenemsS
665EUCASTBreakpoints15StaphylococcusgenusisStaphylococcusFOX-SIcarbapenemsI
666EUCASTBreakpoints15StaphylococcusgenusisStaphylococcusFOX-SRcarbapenemsR
667EUCASTBreakpoints15Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SScarbapenemsSNot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
668EUCASTBreakpoints15Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SIcarbapenemsINot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
669EUCASTBreakpoints15Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SRcarbapenemsRNot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
670EUCASTBreakpoints15StaphylococcusgenusisStaphylococcusNOR-SSMFXS
671EUCASTBreakpoints15StaphylococcusgenusisStaphylococcusNOR-SSCIP, LVXI
672EUCASTBreakpoints15StaphylococcusgenusisStaphylococcusNOR-SRCIP, MFX, LVXR
673EUCASTBreakpoints15StaphylococcusgenusisStaphylococcusERYSAZM, CLR, RXTS
674EUCASTBreakpoints15StaphylococcusgenusisStaphylococcusTCYSDOX, MNOS
675EUCASTBreakpoints15Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSCTX, CROI
676EUCASTBreakpoints15StaphylococcusgenusisStaphylococcusTCYRDOX, MNOR
677EUCASTBreakpoints15StaphylococcusgenusisStaphylococcusERYRAZM, CLR, RXTR
678EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENSpenicillinsS
679EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENIpenicillinsI
680EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENRpenicillinsR
681EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENScephalosporinsS
682EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENIcephalosporinsI
683EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENRcephalosporinsR
684EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENScarbapenemsS
685EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENIcarbapenemsI
686EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENRcarbapenemsR
687EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SSMFXSdoes not explicitly state that it is for other fluoroquinolones
688EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SSLVXIdoes not explicitly state that it is for other fluoroquinolones
689EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SRMFX, LVXRdoes not explicitly state that it is for other fluoroquinolones
690EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GVANSDAL, ORIS
691EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYSAZM, CLR, RXTS
692EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYRAZM, CLR, RXTR
693EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GTCY-SSDOX, MNOS
694EUCASTBreakpoints15Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GTCY-SRDOX, MNOR
695EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeOXA-SSCECI
696EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaePENSCECI
697EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeOXA-SRPEN, PHNRfrom flowchart: when OXA < 20 or PEN > 0.06
698EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaePENRPHNRfrom flowchart: when OXA < 20 or PEN > 0.06
699EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPSAMX, AMC, SAM, PIP, TZPS
700EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPIAMX, AMC, SAM, PIP, TZPI
701EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPRAMX, AMC, SAM, PIP, TZPR
702EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SSMFXSdoes not explicitly state that it is for other fluoroquinolones
703EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SSLVXIdoes not explicitly state that it is for other fluoroquinolones
704EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SRMFX, LVXRdoes not explicitly state that it is for other fluoroquinolones
705EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYSAZM, CLR, RXTS
706EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYRAZM, CLR, RXTR
707EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCY-SSDOX, MNOS
708EUCASTBreakpoints15Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCY-SRDOX, MNOR
709EUCASTBreakpoints15Vibrio spp.genusisVibrioPEF-SSCIP, LVXS
710EUCASTBreakpoints15Vibrio spp.genusisVibrioPEF-SICIP, LVXI
711EUCASTBreakpoints15Vibrio spp.genusisVibrioPEF-SRCIP, LVXR
712EUCASTBreakpoints15Vibrio spp.genusisVibrioERYSAZMS
713EUCASTBreakpoints15Vibrio spp.genusisVibrioERYIAZMI
714EUCASTBreakpoints15Vibrio spp.genusisVibrioERYRAZMR
715EUCASTBreakpoints15Vibrio spp.genusisVibrioTCY-SSDOXS
716EUCASTBreakpoints15Vibrio spp.genusisVibrioTCY-SIDOXI
717EUCASTBreakpoints15Vibrio spp.genusisVibrioTCY-SRDOXR
718EUCASTBreakpoints15Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)PEN-SSAMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZPSMO group name will be expanded in eucast_rules()
719EUCASTBreakpoints15Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)PEN-SRAMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZPRMO group name will be expanded in eucast_rules()
720EUCASTBreakpoints15Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)AMPSAMX, AMC, SAM, PIP, TZPSMO group name will be expanded in eucast_rules()
721EUCASTBreakpoints15Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)AMPIAMX, AMC, SAM, PIP, TZPIMO group name will be expanded in eucast_rules()
722EUCASTBreakpoints15Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)AMPRAMX, AMC, SAM, PIP, TZPRMO group name will be expanded in eucast_rules()
723EUCASTBreakpoints16Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPSAMXS
724EUCASTBreakpoints16Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPIAMXI
725EUCASTBreakpoints16Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPRAMXR
726EUCASTBreakpoints16Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPSLVXS
727EUCASTBreakpoints16Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPILVXI
728EUCASTBreakpoints16Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPRLVXR
729EUCASTBreakpoints16Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SSfluoroquinolonesS
730EUCASTBreakpoints16Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SIfluoroquinolonesI
731EUCASTBreakpoints16Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SRfluoroquinolonesR
732EUCASTBreakpoints16Anaerobic bacteriagenusisPrevotellaAMPSAMXS
733EUCASTBreakpoints16Anaerobic bacteriagenusisPrevotellaAMPIAMXI
734EUCASTBreakpoints16Anaerobic bacteriagenusisPrevotellaAMPRAMXR
735EUCASTBreakpoints16Anaerobic bacteriagenus_speciesisFusobacterium necrophorumAMPSAMXS
736EUCASTBreakpoints16Anaerobic bacteriagenus_speciesisFusobacterium necrophorumAMPIAMXI
737EUCASTBreakpoints16Anaerobic bacteriagenus_speciesisFusobacterium necrophorumAMPRAMXR
738EUCASTBreakpoints16Anaerobic bacteriagenus_speciesisClostridium perfringensAMPSAMXS
739EUCASTBreakpoints16Anaerobic bacteriagenus_speciesisClostridium perfringensAMPIAMXI
740EUCASTBreakpoints16Anaerobic bacteriagenus_speciesisClostridium perfringensAMPRAMXR
741EUCASTBreakpoints16Anaerobic bacteriagenus_speciesisCutibacterium acnesAMPSAMXS
742EUCASTBreakpoints16Anaerobic bacteriagenus_speciesisCutibacterium acnesAMPIAMXI
743EUCASTBreakpoints16Anaerobic bacteriagenus_speciesisCutibacterium acnesAMPRAMXR
744EUCASTBreakpoints16Anaerobic bacteriagenus_speciesisCutibacterium acnesCTXSCROS
745EUCASTBreakpoints16Anaerobic bacteriagenus_speciesisCutibacterium acnesCTXICROI
746EUCASTBreakpoints16Anaerobic bacteriagenus_speciesisCutibacterium acnesCTXRCROR
747EUCASTBreakpoints16BacillusgenusisBacillusNOR-SSCIP, LVXI
748EUCASTBreakpoints16BacillusgenusisBacillusNOR-SRCIP, LVXR
749EUCASTBreakpoints16Bacillus anthracisgenus_speciesisBacillus anthracisPENIAMXS
750EUCASTBreakpoints16Bacillus anthracisgenus_speciesisBacillus anthracisPENRAMXR
751EUCASTBreakpoints16Bacillus anthracisgenus_speciesisBacillus anthracisTCY-SSDOXS
752EUCASTBreakpoints16Bacillus anthracisgenus_speciesisBacillus anthracisTCY-SRDOXR
753EUCASTBreakpoints16Brucella melitensisgenus_speciesisBrucella melitensisTCY-SSDOXS
754EUCASTBreakpoints16Brucella melitensisgenus_speciesisBrucella melitensisTCY-SRDOXR
755EUCASTBreakpoints16Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCY-SSDOXI
756EUCASTBreakpoints16Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCY-SRDOXR
757EUCASTBreakpoints16Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYSAZM, CLRS
758EUCASTBreakpoints16Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYIAZM, CLRI
759EUCASTBreakpoints16Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYRAZM, CLRR
760EUCASTBreakpoints16Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYSDOXS
761EUCASTBreakpoints16Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYIDOXI
762EUCASTBreakpoints16Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYRDOXR
763EUCASTBreakpoints16Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENIAMXS
764EUCASTBreakpoints16Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRAMXR
765EUCASTBreakpoints16Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENICTXI
766EUCASTBreakpoints16Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRCTXR
767EUCASTBreakpoints16Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENIMEMS
768EUCASTBreakpoints16Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRMEMR
769EUCASTBreakpoints16Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransTCYSDOXS
770EUCASTBreakpoints16Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransTCYRDOXR
771EUCASTBreakpoints16Enterobacterales (Order)orderisEnterobacteralesAMPSAMXS
772EUCASTBreakpoints16Enterobacterales (Order)orderisEnterobacteralesAMPIAMXI
773EUCASTBreakpoints16Enterobacterales (Order)orderisEnterobacteralesAMPRAMXR
774EUCASTBreakpoints16Enterobacterales (Order)orderisEnterobacteralesLEXSCZOI
775EUCASTBreakpoints16Enterobacterales (Order)orderisEnterobacteralesCFRSCZOI
776EUCASTBreakpoints16Enterobacterales (Order)orderisEnterobacteralesPEF-SSfluoroquinolonesS
777EUCASTBreakpoints16Enterobacterales (Order)orderisEnterobacteralesPEF-SIfluoroquinolonesI
778EUCASTBreakpoints16Enterobacterales (Order)orderisEnterobacteralesPEF-SRfluoroquinolonesR
779EUCASTBreakpoints16Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYSDOXS
780EUCASTBreakpoints16Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYIDOXI
781EUCASTBreakpoints16Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYRDOXR
782EUCASTBreakpoints16EnterococcusgenusisEnterococcusAMPSAMP, SAM, AMXS
783EUCASTBreakpoints16EnterococcusgenusisEnterococcusAMPIAMP, SAM, AMXI
784EUCASTBreakpoints16EnterococcusgenusisEnterococcusAMPRAMP, SAM, AMXR
785EUCASTBreakpoints16EnterococcusgenusisEnterococcusAMPRAMX, AMCR
786EUCASTBreakpoints16EnterococcusgenusisEnterococcusNOR-SSCIP, LVXS
787EUCASTBreakpoints16EnterococcusgenusisEnterococcusNOR-SICIP, LVXI
788EUCASTBreakpoints16EnterococcusgenusisEnterococcusNOR-SRCIP, LVXR
789EUCASTBreakpoints16Haemophilus influenzaegenus_speciesisHaemophilus influenzaePEN-S, BLA-SR, RAMP, AMX, PIPR
790EUCASTBreakpoints16Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCSSAMS
791EUCASTBreakpoints16Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCISAMI
792EUCASTBreakpoints16Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCRSAMR
793EUCASTBreakpoints16Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SSCIP, LVX, MFX, OFXS
794EUCASTBreakpoints16Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SRCIP, LVX, MFX, OFXR
795EUCASTBreakpoints16Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYSDOX, MNOS
796EUCASTBreakpoints16Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYRDOX, MNOR
797EUCASTBreakpoints16Kingella kingaegenus_speciesisKingella kingaeBLA-SRPEN, AMP, AMXR
798EUCASTBreakpoints16Kingella kingaegenus_speciesisKingella kingaePENSAMP, AMXS
799EUCASTBreakpoints16Kingella kingaegenus_speciesisKingella kingaePENIAMP, AMXI
800EUCASTBreakpoints16Kingella kingaegenus_speciesisKingella kingaePENRAMP, AMXR
801EUCASTBreakpoints16Kingella kingaegenus_speciesisKingella kingaeERYSAZM, CLRS
802EUCASTBreakpoints16Kingella kingaegenus_speciesisKingella kingaeERYIAZM, CLRI
803EUCASTBreakpoints16Kingella kingaegenus_speciesisKingella kingaeERYRAZM, CLRR
804EUCASTBreakpoints16Kingella kingaegenus_speciesisKingella kingaeTCYSDOXS
805EUCASTBreakpoints16Kingella kingaegenus_speciesisKingella kingaeTCYRDOXR
806EUCASTBreakpoints16Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisBLA-SRAMP, AMX, APL, APX, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CLO, CRB, CRN, DIC, EPC, FLC, HET, LEN, MEC, MET, MEZ, MTM, NAF, OXA, PEN, PHE, PHN, PIP, PME, PNM, PRB, PRC, PRP, PVM, SBC, SLT6, SRX, TAL, TEM, TICRpenicillins()[!penicillins() %in% betalactams_with_inhibitor()]
807EUCASTBreakpoints16Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCSTZPS
808EUCASTBreakpoints16Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCITZPI
809EUCASTBreakpoints16Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCRTZPR
810EUCASTBreakpoints16Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNAL-SSCIP, LVX, MFX, OFXS
811EUCASTBreakpoints16Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNAL-SRCIP, LVX, MFX, OFXR
812EUCASTBreakpoints16Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYSAZM, CLR, RXTS
813EUCASTBreakpoints16Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYRAZM, CLR, RXTR
814EUCASTBreakpoints16Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisTCYSDOX, MNOS
815EUCASTBreakpoints16Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisTCYRDOX, MNOR
816EUCASTBreakpoints16Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-SRAMP, AMXR
817EUCASTBreakpoints16Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, SAMP, AMXS
818EUCASTBreakpoints16Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, IAMP, AMXI
819EUCASTBreakpoints16Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, RAMP, AMXR
820EUCASTBreakpoints16Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SSMNOS
821EUCASTBreakpoints16Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SIMNOI
822EUCASTBreakpoints16Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SRMNOR
823EUCASTBreakpoints16Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SSDOXS
824EUCASTBreakpoints16Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SIDOXI
825EUCASTBreakpoints16Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SRDOXR
826EUCASTBreakpoints16Pasteurella multocidagenus_speciesisPasteurella multocidaPENSAMP, AMXS
827EUCASTBreakpoints16Pasteurella multocidagenus_speciesisPasteurella multocidaPENIAMP, AMXI
828EUCASTBreakpoints16Pasteurella multocidagenus_speciesisPasteurella multocidaPENRAMP, AMXR
829EUCASTBreakpoints16Pasteurella multocidagenus_speciesisPasteurella multocidaNAL-SSCIP, LVXS
830EUCASTBreakpoints16Pasteurella multocidagenus_speciesisPasteurella multocidaNAL-SRCIP, LVXR
831EUCASTBreakpoints16Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SRpenicillinsRSee last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins
832EUCASTBreakpoints16Staphylococcusgenus_speciesisStaphylococcus aureusPEN, FOX-SS, SpenicillinsS
833EUCASTBreakpoints16Staphylococcusgenus_speciesisStaphylococcus aureusPEN, FOX-SR, Sbetalactams_with_inhibitor, isoxazolylpenicillins, NAFS
834EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusFOX-SRPEN, PHN, AMP, AMX, PIP, TICR
835EUCASTBreakpoints16Staphylococcusgenus_speciesisStaphylococcus saprophyticusAMPSAMP, SAM, AMX, AMC, PIP, TZPS
836EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusFOX-SSCZO, FEP, CTX, CRO, CXMI
837EUCASTBreakpoints16Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SRPEN, PHN, AMP, AMX, PIP, TICR
838EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusOXA-SSCZO, FEP, CTX, CRO, CXMI
839EUCASTBreakpoints16Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSCPTS
840EUCASTBreakpoints16Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSBPRS
841EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusFOX-SScarbapenemsS
842EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusFOX-SIcarbapenemsI
843EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusFOX-SRcarbapenemsR
844EUCASTBreakpoints16Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SScarbapenemsSNot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
845EUCASTBreakpoints16Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SIcarbapenemsINot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
846EUCASTBreakpoints16Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SRcarbapenemsRNot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
847EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusNOR-SSMFXS
848EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusNOR-SRCIP, MFX, LVXR
849EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusNOR-SSCIP, LVXI
850EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusERYSAZM, CLR, RXTS
851EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusTCYSDOX, MNOS
852EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusTCYRDOX, MNOR
853EUCASTBreakpoints16StaphylococcusgenusisStaphylococcusERYRAZM, CLR, RXTR
854EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENSpenicillinsS
855EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENIpenicillinsI
856EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENRpenicillinsR
857EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENScephalosporinsS
858EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENIcephalosporinsI
859EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENRcephalosporinsR
860EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENScarbapenemsS
861EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENIcarbapenemsI
862EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENRcarbapenemsR
863EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SSMFXSdoes not explicitly state that it is for other fluoroquinolones
864EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SSLVXIdoes not explicitly state that it is for other fluoroquinolones
865EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SRMFX, LVXRdoes not explicitly state that it is for other fluoroquinolones
866EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GVANSDAL, ORIS
867EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYSAZM, CLR, RXTS
868EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYRAZM, CLR, RXTR
869EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GTCY-SSDOX, MNOS
870EUCASTBreakpoints16Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GTCY-SRDOX, MNOR
871EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeOXA-SSCECI
872EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaePENSCECI
873EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeOXA-SRPEN, PHNRfrom flowchart: when OXA < 20 or PEN > 0.06
874EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaePENRPHNRfrom flowchart: when OXA < 20 or PEN > 0.06
875EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPSAMX, AMC, SAM, PIP, TZPS
876EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPIAMX, AMC, SAM, PIP, TZPI
877EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPRAMX, AMC, SAM, PIP, TZPR
878EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SSMFXSdoes not explicitly state that it is for other fluoroquinolones
879EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SSLVXIdoes not explicitly state that it is for other fluoroquinolones
880EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SRMFX, LVXRdoes not explicitly state that it is for other fluoroquinolones
881EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYSAZM, CLR, RXTS
882EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYRAZM, CLR, RXTR
883EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCY-SSDOX, MNOS
884EUCASTBreakpoints16Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCY-SRDOX, MNOR
885EUCASTBreakpoints16Vibrio spp.genusisVibrioPEF-SSCIP, LVXS
886EUCASTBreakpoints16Vibrio spp.genusisVibrioPEF-SICIP, LVXI
887EUCASTBreakpoints16Vibrio spp.genusisVibrioPEF-SRCIP, LVXR
888EUCASTBreakpoints16Vibrio spp.genusisVibrioERYSAZMS
889EUCASTBreakpoints16Vibrio spp.genusisVibrioERYIAZMI
890EUCASTBreakpoints16Vibrio spp.genusisVibrioERYRAZMR
891EUCASTBreakpoints16Vibrio spp.genusisVibrioTCY-SSDOXS
892EUCASTBreakpoints16Vibrio spp.genusisVibrioTCY-SIDOXI
893EUCASTBreakpoints16Vibrio spp.genusisVibrioTCY-SRDOXR
894EUCASTBreakpoints16Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)PEN-SSAMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZPSMO group name will be expanded in eucast_rules()
895EUCASTBreakpoints16Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)PEN-SRAMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZPRMO group name will be expanded in eucast_rules()
896EUCASTBreakpoints16Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)AMPSAMX, AMC, SAM, PIP, TZPSMO group name will be expanded in eucast_rules()
897EUCASTBreakpoints16Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)AMPIAMX, AMC, SAM, PIP, TZPIMO group name will be expanded in eucast_rules()
898EUCASTBreakpoints16Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)AMPRAMX, AMC, SAM, PIP, TZPRMO group name will be expanded in eucast_rules()
899EUCASTBreakpoints13.1Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPSAMXS
900EUCASTBreakpoints13.1Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPIAMXI
901EUCASTBreakpoints13.1Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeAMPRAMXR
902EUCASTBreakpoints13.1Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPSLVXS
903EUCASTBreakpoints13.1Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPILVXI
904EUCASTBreakpoints13.1Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeCIPRLVXR
905EUCASTBreakpoints13.1Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SSfluoroquinolonesS
906EUCASTBreakpoints13.1Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SIfluoroquinolonesI
907EUCASTBreakpoints13.1Aerococcus sanguinicola/urinaegenus_speciesisAerococcus sanguinicola, Aerococcus urinaeNOR-SRfluoroquinolonesR
908EUCASTBreakpoints13.1Anaerobic bacteriagenusisPrevotellaAMPSAMXS
909EUCASTBreakpoints13.1Anaerobic bacteriagenusisPrevotellaAMPIAMXI
910EUCASTBreakpoints13.1Anaerobic bacteriagenusisPrevotellaAMPRAMXR
911EUCASTBreakpoints13.1Anaerobic bacteriagenus_speciesisFusobacterium necrophorumAMPSAMXS
912EUCASTBreakpoints13.1Anaerobic bacteriagenus_speciesisFusobacterium necrophorumAMPIAMXI
913EUCASTBreakpoints13.1Anaerobic bacteriagenus_speciesisFusobacterium necrophorumAMPRAMXR
914EUCASTBreakpoints13.1Anaerobic bacteriagenus_speciesisClostridium perfringensAMPSAMXS
915EUCASTBreakpoints13.1Anaerobic bacteriagenus_speciesisClostridium perfringensAMPIAMXI
916EUCASTBreakpoints13.1Anaerobic bacteriagenus_speciesisClostridium perfringensAMPRAMXR
917EUCASTBreakpoints13.1Anaerobic bacteriagenus_speciesisCutibacterium acnesAMPSAMXS
918EUCASTBreakpoints13.1Anaerobic bacteriagenus_speciesisCutibacterium acnesAMPIAMXI
919EUCASTBreakpoints13.1Anaerobic bacteriagenus_speciesisCutibacterium acnesAMPRAMXR
920EUCASTBreakpoints13.1Anaerobic bacteriagenus_speciesisCutibacterium acnesCTXSCROS
921EUCASTBreakpoints13.1Anaerobic bacteriagenus_speciesisCutibacterium acnesCTXICROI
922EUCASTBreakpoints13.1Anaerobic bacteriagenus_speciesisCutibacterium acnesCTXRCROR
923EUCASTBreakpoints13.1BacillusgenusisBacillusNOR-SSCIP, LVXI
924EUCASTBreakpoints13.1BacillusgenusisBacillusNOR-SRCIP, LVXR
925EUCASTBreakpoints13.1Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCY-SSDOXI
926EUCASTBreakpoints13.1Burkholderia pseudomalleigenus_speciesisBurkholderia pseudomalleiTCY-SRDOXR
927EUCASTBreakpoints13.1Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYSAZM, CLRS
928EUCASTBreakpoints13.1Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYIAZM, CLRI
929EUCASTBreakpoints13.1Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniERYRAZM, CLRR
930EUCASTBreakpoints13.1Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYSDOXS
931EUCASTBreakpoints13.1Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYIDOXI
932EUCASTBreakpoints13.1Campylobacter coli/jejunigenus_speciesone_ofCampylobacter coli, Campylobacter jejuniTCYRDOXR
933EUCASTBreakpoints13.1Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENIAMXS
934EUCASTBreakpoints13.1Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRAMXR
935EUCASTBreakpoints13.1Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENSCTXS
936EUCASTBreakpoints13.1Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENICTXI
937EUCASTBreakpoints13.1Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRCTXR
938EUCASTBreakpoints13.1Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENIMEMS
939EUCASTBreakpoints13.1Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRMEMR
940EUCASTBreakpoints13.1Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransTCYSDOXS
941EUCASTBreakpoints13.1Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransTCYIDOXI
942EUCASTBreakpoints13.1Corynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransTCYRDOXR
943EUCASTBreakpoints13.1Enterobacterales (Order)orderisEnterobacteralesAMPSAMXS
944EUCASTBreakpoints13.1Enterobacterales (Order)orderisEnterobacteralesAMPIAMXI
945EUCASTBreakpoints13.1Enterobacterales (Order)orderisEnterobacteralesAMPRAMXR
946EUCASTBreakpoints13.1Enterobacterales (Order)orderisEnterobacteralesLEXSCZOI
947EUCASTBreakpoints13.1Enterobacterales (Order)orderisEnterobacteralesCFRSCZOI
948EUCASTBreakpoints13.1Enterobacterales (Order)orderisEnterobacteralesPEF-SSfluoroquinolonesS
949EUCASTBreakpoints13.1Enterobacterales (Order)orderisEnterobacteralesPEF-SIfluoroquinolonesI
950EUCASTBreakpoints13.1Enterobacterales (Order)orderisEnterobacteralesPEF-SRfluoroquinolonesR
951EUCASTBreakpoints13.1Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYSDOXS
952EUCASTBreakpoints13.1Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYIDOXI
953EUCASTBreakpoints13.1Enterobacterales (Order)genus_speciesisYersinia enterocoliticaTCYRDOXR
954EUCASTBreakpoints13.1EnterococcusgenusisEnterococcusAMPSAMP, SAM, AMX, AMC, PIP, TZPS
955EUCASTBreakpoints13.1EnterococcusgenusisEnterococcusAMPIAMP, SAM, AMX, AMC, PIP, TZPI
956EUCASTBreakpoints13.1EnterococcusgenusisEnterococcusAMPRAMP, SAM, AMX, AMC, PIP, TZPR
957EUCASTBreakpoints13.1EnterococcusgenusisEnterococcusNOR-SSCIP, LVXS
958EUCASTBreakpoints13.1EnterococcusgenusisEnterococcusNOR-SICIP, LVXI
959EUCASTBreakpoints13.1EnterococcusgenusisEnterococcusNOR-SRCIP, LVXR
960EUCASTBreakpoints13.1Haemophilus influenzaegenus_speciesisHaemophilus influenzaePEN-S, BLA-SR, RAMP, AMX, PIPR
961EUCASTBreakpoints13.1Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCSSAMS
962EUCASTBreakpoints13.1Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCISAMI
963EUCASTBreakpoints13.1Haemophilus influenzaegenus_speciesisHaemophilus influenzaeAMCRSAMR
964EUCASTBreakpoints13.1Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SSCIP, LVX, MFX, OFXS
965EUCASTBreakpoints13.1Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SICIP, LVX, MFX, OFXI
966EUCASTBreakpoints13.1Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNAL-SRCIP, LVX, MFX, OFXR
967EUCASTBreakpoints13.1Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYSDOX, MNOS
968EUCASTBreakpoints13.1Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYRDOX, MNOR
969EUCASTBreakpoints13.1Kingella kingaegenus_speciesisKingella kingaeBLA-SRPEN, AMP, AMXR
970EUCASTBreakpoints13.1Kingella kingaegenus_speciesisKingella kingaePENSAMP, AMXS
971EUCASTBreakpoints13.1Kingella kingaegenus_speciesisKingella kingaePENIAMP, AMXI
972EUCASTBreakpoints13.1Kingella kingaegenus_speciesisKingella kingaePENRAMP, AMXR
973EUCASTBreakpoints13.1Kingella kingaegenus_speciesisKingella kingaeERYSAZM, CLRS
974EUCASTBreakpoints13.1Kingella kingaegenus_speciesisKingella kingaeERYIAZM, CLRI
975EUCASTBreakpoints13.1Kingella kingaegenus_speciesisKingella kingaeERYRAZM, CLRR
976EUCASTBreakpoints13.1Kingella kingaegenus_speciesisKingella kingaeTCYSDOXS
977EUCASTBreakpoints13.1Kingella kingaegenus_speciesisKingella kingaeTCYRDOXR
978EUCASTBreakpoints13.1Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisBLA-SRAMP, AMX, APL, APX, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CLO, CRB, CRN, DIC, EPC, FLC, HET, LEN, MEC, MET, MEZ, MTM, NAF, OXA, PEN, PHE, PHN, PIP, PME, PNM, PRB, PRC, PRP, PVM, SBC, SLT6, SRX, TAL, TEM, TICRpenicillins()[!penicillins() %in% betalactams_with_inhibitor()]
979EUCASTBreakpoints13.1Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCSTZPS
980EUCASTBreakpoints13.1Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCITZPI
981EUCASTBreakpoints13.1Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisAMCRTZPR
982EUCASTBreakpoints13.1Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNAL-SSCIP, LVX, MFX, OFXS
983EUCASTBreakpoints13.1Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNAL-SRCIP, LVX, MFX, OFXR
984EUCASTBreakpoints13.1Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYSAZM, CLR, RXTS
985EUCASTBreakpoints13.1Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisERYRAZM, CLR, RXTR
986EUCASTBreakpoints13.1Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisTCYSDOX, MNOS
987EUCASTBreakpoints13.1Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisTCYRDOX, MNOR
988EUCASTBreakpoints13.1Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-SRAMP, AMXR
989EUCASTBreakpoints13.1Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, SAMP, AMXS
990EUCASTBreakpoints13.1Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, IAMP, AMXI
991EUCASTBreakpoints13.1Neisseria gonorrhoeaegenus_speciesisNeisseria gonorrhoeaeBLA-S, PENS, RAMP, AMXR
992EUCASTBreakpoints13.1Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SSMNOS
993EUCASTBreakpoints13.1Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SIMNOI
994EUCASTBreakpoints13.1Neisseria meningitidisgenus_speciesisNeisseria meningitidisTCY-SRMNOR
995EUCASTBreakpoints13.1Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SSDOXS
996EUCASTBreakpoints13.1Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SIDOXI
997EUCASTBreakpoints13.1Neisseria meningitidisgenus_speciesisPasteurella multocidaTCY-SRDOXR
998EUCASTBreakpoints13.1Pasteurella multocidagenus_speciesisPasteurella multocidaPENSAMP, AMXS
999EUCASTBreakpoints13.1Pasteurella multocidagenus_speciesisPasteurella multocidaPENIAMP, AMXI
1000EUCASTBreakpoints13.1Pasteurella multocidagenus_speciesisPasteurella multocidaPENRAMP, AMXR
1001EUCASTBreakpoints13.1Pasteurella multocidagenus_speciesisPasteurella multocidaNAL-SSCIP, LVXS
1002EUCASTBreakpoints13.1Pasteurella multocidagenus_speciesisPasteurella multocidaNAL-SRCIP, LVXR
1003EUCASTBreakpoints13.1Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SRpenicillinsRSee last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins
1004EUCASTBreakpoints13.1Staphylococcusgenus_speciesisStaphylococcus aureusPEN, FOX-SS, SpenicillinsS
1005EUCASTBreakpoints13.1Staphylococcusgenus_speciesisStaphylococcus aureusPEN, FOX-SR, Sbetalactams_with_inhibitor, isoxazolylpenicillins, NAFS
1006EUCASTBreakpoints13.1StaphylococcusgenusisStaphylococcusFOX-SRPEN, PHN, AMP, AMX, PIP, TICR
1007EUCASTBreakpoints13.1Staphylococcusgenus_speciesisStaphylococcus saprophyticusAMPSAMP, SAM, AMX, AMC, PIP, TZPS
1008EUCASTBreakpoints13.1Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SRPEN, PHN, AMP, AMX, PIP, TICR
1009EUCASTBreakpoints13.1Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSCPTS
1010EUCASTBreakpoints13.1Staphylococcusgenus_speciesisStaphylococcus aureusFOX-SSBPRS
1011EUCASTBreakpoints13.1StaphylococcusgenusisStaphylococcusFOX-SScarbapenemsS
1012EUCASTBreakpoints13.1StaphylococcusgenusisStaphylococcusFOX-SIcarbapenemsI
1013EUCASTBreakpoints13.1StaphylococcusgenusisStaphylococcusFOX-SRcarbapenemsR
1014EUCASTBreakpoints13.1Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SScarbapenemsSNot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
1015EUCASTBreakpoints13.1Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SIcarbapenemsINot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
1016EUCASTBreakpoints13.1Staphylococcusgenus_speciesone_ofStaphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulansOXA-SRcarbapenemsRNot explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
1017EUCASTBreakpoints13.1StaphylococcusgenusisStaphylococcusNOR-SSMFXS
1018EUCASTBreakpoints13.1StaphylococcusgenusisStaphylococcusNOR-SSCIP, LVXI
1019EUCASTBreakpoints13.1Staphylococcusgenus_speciesisStaphylococcus aureusVANSDAL, ORIS
1020EUCASTBreakpoints13.1Staphylococcusgenus_speciesisStaphylococcus aureusFOX-S, VANR, STLVSMRSA isolates are in this file safely denoted as FOX resistant
1021EUCASTBreakpoints13.1StaphylococcusgenusisStaphylococcusERYSAZM, CLR, RXTS
1022EUCASTBreakpoints13.1StaphylococcusgenusisStaphylococcusTCYSDOX, MNOS
1023EUCASTBreakpoints13.1StaphylococcusgenusisStaphylococcusTCYRDOX, MNOR
1024EUCASTBreakpoints13.1StaphylococcusgenusisStaphylococcusERYRAZM, CLR, RXTR
1025EUCASTBreakpoints13.1StaphylococcusgenusisStaphylococcusNOR-SRCIP, MFX, LVXR
1026EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENSpenicillinsS
1027EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENIpenicillinsI
1028EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group C, Streptococcus Group GPENRpenicillinsR
1029EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENScephalosporinsS
1030EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENIcephalosporinsI
1031EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENRcephalosporinsR
1032EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENScarbapenemsS
1033EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENIcarbapenemsI
1034EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENRcarbapenemsR
1035EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SSMFXSdoes not explicitly state that it is for other fluoroquinolones
1036EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SSLVXIdoes not explicitly state that it is for other fluoroquinolones
1037EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNOR-SRMFX, LVXRdoes not explicitly state that it is for other fluoroquinolones
1038EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GVANSDAL, ORIS
1039EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYSAZM, CLR, RXTS
1040EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GERYRAZM, CLR, RXTR
1041EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GTCY-SSDOX, MNOS
1042EUCASTBreakpoints13.1Streptococcus groups A, B, C, Ggenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GTCY-SRDOX, MNOR
1043EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeOXA-SSCECI
1044EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaePENSCECI
1045EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeOXA-SRPEN, PHNRfrom flowchart: when OXA < 20 or PEN > 0.06
1046EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaePENRPHNRfrom flowchart: when OXA < 20 or PEN > 0.06
1047EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPSAMX, AMC, SAM, PIP, TZPS
1048EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPIAMX, AMC, SAM, PIP, TZPI
1049EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeAMPRAMX, AMC, SAM, PIP, TZPR
1050EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SSMFXSdoes not explicitly state that it is for other fluoroquinolones
1051EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SSLVXIdoes not explicitly state that it is for other fluoroquinolones
1052EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNOR-SRMFX, LVXRdoes not explicitly state that it is for other fluoroquinolones
1053EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYSAZM, CLR, RXTS
1054EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERYRAZM, CLR, RXTR
1055EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCY-SSDOX, MNOS
1056EUCASTBreakpoints13.1Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCY-SRDOX, MNOR
1057EUCASTBreakpoints13.1Vibrio spp.genusisVibrioPEF-SSCIP, LVXS
1058EUCASTBreakpoints13.1Vibrio spp.genusisVibrioPEF-SICIP, LVXI
1059EUCASTBreakpoints13.1Vibrio spp.genusisVibrioPEF-SRCIP, LVXR
1060EUCASTBreakpoints13.1Vibrio spp.genusisVibrioERYSAZMS
1061EUCASTBreakpoints13.1Vibrio spp.genusisVibrioERYIAZMI
1062EUCASTBreakpoints13.1Vibrio spp.genusisVibrioERYRAZMR
1063EUCASTBreakpoints13.1Vibrio spp.genusisVibrioTCY-SSDOXS
1064EUCASTBreakpoints13.1Vibrio spp.genusisVibrioTCY-SIDOXI
1065EUCASTBreakpoints13.1Vibrio spp.genusisVibrioTCY-SRDOXR
1066EUCASTBreakpoints13.1Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)PEN-SSAMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZPSwill be expanded in eucast_rules()
1067EUCASTBreakpoints13.1Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)PEN-SRAMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZPRwill be expanded in eucast_rules()
1068EUCASTBreakpoints13.1Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)AMPSAMX, AMC, SAM, PIP, TZPSwill be expanded in eucast_rules()
1069EUCASTBreakpoints13.1Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)AMPIAMX, AMC, SAM, PIP, TZPIwill be expanded in eucast_rules()
1070EUCASTBreakpoints13.1Viridans group streptococcigenus_speciesone_ofViridans Group Streptococcus (VGS)AMPRAMX, AMC, SAM, PIP, TZPRwill be expanded in eucast_rules()
1071EUCASTBreakpointsCorynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENIAMXS
1072EUCASTBreakpointsCorynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRAMXR
1073EUCASTBreakpointsCorynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENSCTXS
1074EUCASTBreakpointsCorynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENICTXI
1075EUCASTBreakpointsCorynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRCTXR
1076EUCASTBreakpointsCorynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENIMEMS
1077EUCASTBreakpointsCorynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransPENRMEMR
1078EUCASTBreakpointsCorynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransTCYSDOXS
1079EUCASTBreakpointsCorynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransTCYIDOXI
1080EUCASTBreakpointsCorynebacterium diphtheriae/ulceransgenus_speciesone_ofCorynebacterium diphtheriae, Corynebacterium ulceransTCYRDOXR
1081EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.orderisEnterobacteralesPEN, glycopeptides, lipoglycopeptides, FUS, macrolides, lincosamides, streptogramins, RIF, oxazolidinonesR
1082EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesone_ofCitrobacter koseri, Citrobacter amalonaticusAMP, AMX, TICR
1083EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisCitrobacter freundiiAMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, FOXR
1084EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesone_ofEnterobacter cloacae complexAMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, FOXR
1085EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisEscherichia hermanniiAMP, AMX, TICR
1086EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisHafnia alveiAMP, AMX, PLB, COLR
1087EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisKlebsiella aerogenes AMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, FOXR
1088EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesone_ofKlebsiella pneumoniae complexAMX, AMP, TICR
1089EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisKlebsiella oxytocaAMX, AMP, TICR
1090EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisLeclercia adecarboxylataFOSR
1091EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisMorganella morganii AMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, tetracyclines, PLB, COL, NITR
1092EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisPlesiomonas shigelloides AMX, AMP, SAMR
1093EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisProteus mirabilis tetracyclines, PLB, COL, NITR
1094EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisProteus penneri AMP, AMX, CZO, CEP, LEX, CFR, CXM, tetracyclines, PLB, COL, NITR
1095EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisProteus vulgaris AMP, AMX, CZO, CEP, LEX, CFR, CXM, tetracyclines, PLB, COL, NITR
1096EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisProvidencia rettgeri AMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, tetracyclines, PLB, COL, NITR
1097EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisProvidencia stuartiiAMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, tetracyclines, PLB, COL, NITR
1098EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genusisRaoultellaAMP, AMX, TICR
1099EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisSerratia marcescensAMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, FOX, CXM, PLB, COL, NITR
1100EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisYersinia enterocoliticaAMP, AMX, AMC, SAM, TIC, CZO, CEP, LEX, CFR, FOXR
1101EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisYersinia pseudotuberculosisPLB, COLR
1102EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisAeromonas hydrophilaAMP, AMX, SAMR
1103EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisAeromonas veroniiAMP, AMX, SAM, TICR
1104EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisAeromonas dhakensisAMP, AMX, SAM, FOXR
1105EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisAeromonas caviaeAMP, AMX, SAMR
1106EUCASTExpected phenotypes1.2Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp.genus_speciesisAeromonas jandaeiAMP, AMX, SAM, TICR
1107EUCASTExpected phenotypes1.2Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteriagenusone_ofAcinetobacter, Achromobacter, Burkholderia, Elizabethkingia, Elizabethkingia, Ochrobactrum, Pseudomonas, Stenotrophomonas, ChryseobacteriumPEN, cephalosporins_1st, cephalosporins_2nd, glycopeptides, lipoglycopeptides, FUS, macrolides, lincosamides, streptogramins, RIF, oxazolidinonesR
1108EUCASTExpected phenotypes1.2Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteriagenus_speciesone_ofAcinetobacter baumannii, Acinetobacter pittii, Acinetobacter nosocomialisAMP, AMX, AMC, CTX, CRO, ATM, ETP, TMP, FOS, TCY, DOXR
1109EUCASTExpected phenotypes1.2Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteriagenus_speciesisAchromobacter xylosoxidansAMP, AMX, CTX, CRO, ATM, ETPR
1110EUCASTExpected phenotypes1.2Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteriagenus_speciesone_ofBurkholderia cepacia complexAMP, AMX, AMC, SAM, TIC, TCC, PIP, TZP, CTX, CRO, ATM, ETP, CIP, CHL, aminoglycosides, TMP, FOS, PLB, COLR
1111EUCASTExpected phenotypes1.2Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteriagenus_speciesisElizabethkingia meningosepticaAMP, AMX, AMC, SAM, TIC, TCC, CTX, CRO, CAZ, FEP, ATM, ETP, IPM, MEM, PLB, COLR
1112EUCASTExpected phenotypes1.2Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteriagenus_speciesisElizabethkingia anophelisAMP, AMX, AMC, SAM, TIC, TCC, CTX, CRO, CAZ, FEP, ATM, ETP, IPM, MEMR
1113EUCASTExpected phenotypes1.2Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteriagenus_speciesisOchrobactrum anthropiAMP, AMX, AMC, SAM, TIC, TCC, CTX, CRO, CAZ, FEP, ATM, ETPR
1114EUCASTExpected phenotypes1.2Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteriagenus_speciesisPseudomonas aeruginosaAMP, AMX, AMC, SAM, CTX, CRO, ETP, CHL, TMP, KAN, NEO, tetracyclines, TGCR
1115EUCASTExpected phenotypes1.2Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteriagenus_speciesisStenotrophomonas maltophiliaAMP, AMX, AMC, SAM, TIC, PIP, TZP, CTX, CRO, ATM, ETP, IPM, MEM, aminoglycosides, TMP, FOS, TCYR
1116EUCASTExpected phenotypes1.2Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteriagenusisChryseobacteriumAMP, AMX, AMC, SAM, TIC, TCC, CTX, CRO, CAZ, ATM, ETP, IPM, MEM, aminoglycosides, PLB, COLR
1117EUCASTExpected phenotypes1.2Table 3: Expected resistant phenotype in other gram-negative bacteriagenusone_ofHaemophilus, Moraxella, Neisseria, Campylobacterglycopeptides, lipoglycopeptides, lincosamides, oxazolidinonesR
1118EUCASTExpected phenotypes1.2Table 3: Expected resistant phenotype in other gram-negative bacteriagenus_speciesisHaemophilus influenzaeFUS, streptograminsR
1119EUCASTExpected phenotypes1.2Table 3: Expected resistant phenotype in other gram-negative bacteriagenus_speciesisMoraxella catarrhalisTMPR
1120EUCASTExpected phenotypes1.2Table 3: Expected resistant phenotype in other gram-negative bacteriagenusisNeisseriaTMPR
1121EUCASTExpected phenotypes1.2Table 3: Expected resistant phenotype in other gram-negative bacteriagenus_speciesisCampylobacter fetusFUS, streptogramins, TMP, NALR
1122EUCASTExpected phenotypes1.2Table 3: Expected resistant phenotype in other gram-negative bacteriagenus_speciesone_ofCampylobacter jejuni, Campylobacter coli FUS, streptogramins, TMPR
1123EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagramstainisGram-positiveATM, TEM, PLB, COL, NALR
1124EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenus_speciesisStaphylococcus saprophyticusFUS, CAZ, FOS, NOVR
1125EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenus_speciesisStaphylococcus cohniiCAZ, NOVR
1126EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenus_speciesisStaphylococcus xylosusCAZ, NOVR
1127EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenus_speciesisStaphylococcus capitisCAZ, FOSR
1128EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenus_speciesone_ofCoagulase-negative Staphylococcus (CoNS), Staphylococcus aureusCAZR
1129EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenusisStreptococcusFUS, CAZ, aminoglycosidesR
1130EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenus_speciesisEnterococcus faecalisFUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, CLI, QDA, sulfonamidesR
1131EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenus_speciesone_ofEnterococcus gallinarum, Enterococcus casseliflavusFUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, sulfonamidesR
1132EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenus_speciesisEnterococcus faeciumFUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, sulfonamidesR
1133EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenusisCorynebacteriumFOSR
1134EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenus_speciesisListeria monocytogenesCAZ, cephalosporins_except_CAZR
1135EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenusone_ofLeuconostoc, PediococcusVAN, FOSR
1136EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriagenus_speciesisLactobacillus caseiVAN, FOSR
1137EUCASTExpected phenotypes1.2Table 4: Expected resistant phenotype in gram-positive bacteriafullnameisLactobacillus casei rhamnosusVAN, FOSR
1138EUCASTExpected phenotypes1.2Table 5: Expected resistant phenotype in anaerobesgenus_speciesone_ofClostridium ramosum, Clostridium innocuumVANR
1139EUCASTExpert Rules3.3Expert Rules on CampylobactergenusisCampylobacterERYSCLR, AZMS
1140EUCASTExpert Rules3.3Expert Rules on CampylobactergenusisCampylobacterERYRCLR, AZMR
1141EUCASTExpert Rules3.3Expert Rules on Enterobacteralesgenus_speciesone_ofEscherichia coli, Proteus mirabilisAMPRPIPR
1142EUCASTExpert Rules3.3Expert Rules on Enterobacteralesgenus_speciesone_ofEscherichia coli, Proteus mirabilisAMPSPIPS
1143EUCASTExpert Rules3.3Expert Rules on Enterobacteralesfullnamelike^(Klebsiella(?! aerogenes)|Raoultella)PIPRRegex means that K. aerogenes is not matched.
1144EUCASTExpert Rules3.3Expert Rules on Enterobacteralesfullnamelike^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia)CXMSCXM, cephalosporins_2ndRAlso includes the C. freundii complex - these Citrobacter species were not literally mentioned in the document, but the complex was.
1145EUCASTExpert Rules3.3Expert Rules on Enterobacteralesgenusone_ofArsenophonus, Biostraticola, Brenneria, Buchnera, Budvicia, Buttiauxella, Cedecea, Citrobacter, Cosenzaea, Cronobacter, Dickeya, Edwardsiella, Enterobacillus, Enterobacter, Erwinia, Escherichia, Ewingella, Franconibacter, Gibbsiella, Hafnia, Izhakiella, Klebsiella, Kluyvera, Kosakonia, Leclercia, Lelliottia, Leminorella, Lonsdalea, Mangrovibacter, Mixta, Moellerella, Morganella, Obesumbacterium, Pantoea, Pectobacterium, Phaseolibacter, Photorhabdus, Phytobacter, Plesiomonas, Pluralibacter, Pragia, Proteus, Providencia, Pseudescherichia, Pseudocitrobacter, Rahnella, Raoultella, Rosenbergiella, Rouxiella, Saccharobacter, Samsonia, Serratia, Shigella, Shimwellia, Siccibacter, Sodalis, Tatumella, Thorsellia, Trabulsiella, Wigglesworthia, Xenorhabdus, Yersinia, YokenellaCIPRfluoroquinolonesRThis is Enterobacterales except Salmonella spp.
1146EUCASTExpert Rules3.3Expert Rules on Enterobacteralesfullnamelike^(Serratia|Providencia|Proteus|Morganella morganii)TGCR
1147EUCASTExpert Rules3.3Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins)fullnamelike^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei)CTXSCTX, CRO, CAZ, TZPThis is rule 3 of EUCAST Expert Rules v3.3 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
1148EUCASTExpert Rules3.3Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins)fullnamelike^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei)CROSCTX, CRO, CAZ, TZPThis is rule 3 of EUCAST Expert Rules v3.3 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
1149EUCASTExpert Rules3.3Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins)fullnamelike^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei)CAZSCTX, CRO, CAZ, TZPThis is rule 3 of EUCAST Expert Rules v3.3 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
1150EUCASTExpert Rules3.3Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins)fullnamelike^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei)TZPSCTX, CRO, CAZ, TZPThis is rule 3 of EUCAST Expert Rules v3.3 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
1151EUCASTExpert Rules3.3Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins)fullnamelike^(Serratia|Morganella morganii|Providencia)CTXSCTX, CRO, CAZThis is rule 4 of EUCAST Expert Rules v3.3 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
1152EUCASTExpert Rules3.3Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins)fullnamelike^(Serratia|Morganella morganii|Providencia)CROSCTX, CRO, CAZThis is rule 4 of EUCAST Expert Rules v3.3 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
1153EUCASTExpert Rules3.3Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins)fullnamelike^(Serratia|Morganella morganii|Providencia)CAZSCTX, CRO, CAZThis is rule 4 of EUCAST Expert Rules v3.3 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
1154EUCASTExpert Rules3.3Expert Rules on Enterococcusfullnamelike^Enterococcus (faecalis|faecium)AMPRureidopenicillins, IPMR
1155EUCASTExpert Rules3.3Expert Rules on Enterococcusfullnamelike^Enterococcus (faecalis|faecium)AMXRureidopenicillins, IPMR
1156EUCASTExpert Rules3.3Expert Rules on EnterococcusgenusisEnterococcusNORSCIP, LVXS
1157EUCASTExpert Rules3.3Expert Rules on EnterococcusgenusisEnterococcusVANSlipoglycopeptidesS
1158EUCASTExpert Rules3.3Expert Rules on Enterococcusgenus_speciesisEnterococcus faeciumCLIR
1159EUCASTExpert Rules3.3Expert Rules on Haemophilus influenzaegenus_speciesisHaemophilus influenzaePENSbetalactamsS
1160EUCASTExpert Rules3.3Expert Rules on Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNALSfluoroquinolonesS
1161EUCASTExpert Rules3.3Expert Rules on Haemophilus influenzaegenus_speciesisHaemophilus influenzaeNALRCIP, LVX, MFXR
1162EUCASTExpert Rules3.3Expert Rules on Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYSDOX, MNOS
1163EUCASTExpert Rules3.3Expert Rules on Haemophilus influenzaegenus_speciesisHaemophilus influenzaeTCYRDOX, MNOR
1164EUCASTExpert Rules3.3Expert Rules on Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNALSfluoroquinolonesS
1165EUCASTExpert Rules3.3Expert Rules on Moraxella catarrhalisgenus_speciesisMoraxella catarrhalisNALRfluoroquinolonesR
1166EUCASTExpert Rules3.3Expert Rules on SalmonellagenusisSalmonellacephalosporins_2ndR
1167EUCASTExpert Rules3.3Expert Rules on SalmonellagenusisSalmonellaaminoglycosidesR
1168EUCASTExpert Rules3.3Expert Rules on SalmonellagenusisSalmonellaPEFSCIPS
1169EUCASTExpert Rules3.3Expert Rules on SalmonellagenusisSalmonellaPEFRCIPR
1170EUCASTExpert Rules3.3Expert Rules on Staphylococcusgenus_speciesisStaphylococcus aureusFOXSbetalactams_with_inhibitor, carbapenemsSMust be S to all betactams with recognised anti-staphylococcal activity
1171EUCASTExpert Rules3.3Expert Rules on Staphylococcusgenus_speciesisStaphylococcus aureusPENRAMP, AMX, AZL, BAM, CRB, CRN, EPC, HET, MEC, MEZ, MTM, PIP, PME, PVM, SBC, TAL, TEM, TICRall penicillins without beta-lactamse inhibitor and excluding isoxazolylpenicillines
1172EUCASTExpert Rules3.3Expert Rules on StaphylococcusgenusisStaphylococcusERY, CLISmacrolides, lincosamidesS
1173EUCASTExpert Rules3.3Expert Rules on StaphylococcusgenusisStaphylococcusNORSCIP, LVXI
1174EUCASTExpert Rules3.3Expert Rules on StaphylococcusgenusisStaphylococcusNORSMFXS
1175EUCASTExpert Rules3.3Expert Rules on StaphylococcusgenusisStaphylococcusLVXRfluoroquinolonesR
1176EUCASTExpert Rules3.3Expert Rules on StaphylococcusgenusisStaphylococcusMFXRfluoroquinolonesR
1177EUCASTExpert Rules3.3Expert Rules on StaphylococcusgenusisStaphylococcusTCYSDOX, MNO, TGCS
1178EUCASTExpert Rules3.3Expert Rules on StaphylococcusgenusisStaphylococcusTCYRDOX, MNOR
1179EUCASTExpert Rules3.3Expert Rules on StaphylococcusgenusisStaphylococcusLNZSTZDS
1180EUCASTExpert Rules3.3Expert Rules on Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNORSLVXI
1181EUCASTExpert Rules3.3Expert Rules on Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNORSMFXS
1182EUCASTExpert Rules3.3Expert Rules on Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeERY, CLIS, Smacrolides, lincosamidesS
1183EUCASTExpert Rules3.3Expert Rules on Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeNORRLVX, MFXR
1184EUCASTExpert Rules3.3Expert Rules on Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeLVXRfluoroquinolonesR
1185EUCASTExpert Rules3.3Expert Rules on Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeMFXRfluoroquinolonesR
1186EUCASTExpert Rules3.3Expert Rules on Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCYSDOX, MNOS
1187EUCASTExpert Rules3.3Expert Rules on Streptococcus pneumoniaegenus_speciesisStreptococcus pneumoniaeTCYRDOX, MNOR
1188EUCASTExpert Rules3.3Expert Rules on Streptococcus speciesgenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GPENSaminopenicillins, cephalosporins, carbapenemsS
1189EUCASTExpert Rules3.3Expert Rules on Streptococcus speciesgenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNORSLVXI
1190EUCASTExpert Rules3.3Expert Rules on Streptococcus speciesgenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNORSMFXS
1191EUCASTExpert Rules3.3Expert Rules on Streptococcus speciesgenus_speciesone_ofStreptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group GNORRLVX, MFXR