AMR/NAMESPACE

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Executable File

# Generated by roxygen2: do not edit by hand
S3method(as.data.frame,ab)
S3method(as.data.frame,atc)
S3method(as.data.frame,frequency_tbl)
S3method(as.data.frame,mo)
S3method(as.double,mic)
S3method(as.integer,mic)
S3method(as.numeric,mic)
S3method(as.rsi,data.frame)
S3method(as.rsi,default)
S3method(as.rsi,disk)
S3method(as.rsi,mic)
S3method(as.vector,frequency_tbl)
S3method(as_tibble,frequency_tbl)
S3method(barplot,mic)
S3method(barplot,rsi)
S3method(diff,frequency_tbl)
S3method(droplevels,mic)
S3method(droplevels,rsi)
S3method(format,frequency_tbl)
S3method(hist,frequency_tbl)
S3method(kurtosis,data.frame)
S3method(kurtosis,default)
S3method(kurtosis,matrix)
S3method(plot,frequency_tbl)
S3method(plot,mic)
S3method(plot,resistance_predict)
S3method(plot,rsi)
S3method(print,ab)
S3method(print,atc)
S3method(print,catalogue_of_life_version)
S3method(print,disk)
S3method(print,frequency_tbl)
S3method(print,mic)
S3method(print,mo)
S3method(print,mo_renamed)
S3method(print,mo_uncertainties)
S3method(print,rsi)
S3method(pull,ab)
S3method(pull,atc)
S3method(pull,mo)
S3method(select,frequency_tbl)
S3method(skewness,data.frame)
S3method(skewness,default)
S3method(skewness,matrix)
S3method(summary,mic)
S3method(summary,mo)
S3method(summary,rsi)
export("%like%")
export(ab_atc)
export(ab_atc_group1)
export(ab_atc_group2)
export(ab_cid)
export(ab_ddd)
export(ab_group)
export(ab_info)
export(ab_name)
export(ab_official)
export(ab_property)
export(ab_synonyms)
export(ab_tradenames)
export(abname)
export(age)
export(age_groups)
export(anti_join_microorganisms)
export(as.ab)
export(as.atc)
export(as.disk)
export(as.mic)
export(as.mo)
export(as.rsi)
export(atc_name)
export(atc_official)
export(atc_online_ddd)
export(atc_online_groups)
export(atc_online_property)
export(atc_property)
export(atc_tradenames)
export(atc_trivial_nl)
export(availability)
export(brmo)
export(catalogue_of_life_version)
export(count_I)
export(count_IR)
export(count_R)
export(count_S)
export(count_SI)
export(count_all)
export(count_df)
export(eucast_exceptional_phenotypes)
export(eucast_rules)
export(eucast_rules_file)
export(facet_rsi)
export(filter_1st_cephalosporins)
export(filter_2nd_cephalosporins)
export(filter_3rd_cephalosporins)
export(filter_4th_cephalosporins)
export(filter_ab_class)
export(filter_aminoglycosides)
export(filter_carbapenems)
export(filter_cephalosporins)
export(filter_first_isolate)
export(filter_first_weighted_isolate)
export(filter_fluoroquinolones)
export(filter_glycopeptides)
export(filter_macrolides)
export(filter_tetracyclines)
export(first_isolate)
export(freq)
export(frequency_tbl)
export(full_join_microorganisms)
export(g.test)
export(geom_rsi)
export(get_locale)
export(get_mo_source)
export(ggplot_rsi)
export(ggplot_rsi_predict)
export(guess_ab_col)
export(header)
export(inner_join_microorganisms)
export(is.ab)
export(is.atc)
export(is.disk)
export(is.mic)
export(is.mo)
export(is.rsi)
export(is.rsi.eligible)
export(key_antibiotics)
export(key_antibiotics_equal)
export(kurtosis)
export(labels_rsi_count)
export(left_join_microorganisms)
export(like)
export(mdro)
export(mo_authors)
export(mo_class)
export(mo_failures)
export(mo_family)
export(mo_fullname)
export(mo_genus)
export(mo_gramstain)
export(mo_kingdom)
export(mo_name)
export(mo_order)
export(mo_phylum)
export(mo_property)
export(mo_rank)
export(mo_ref)
export(mo_renamed)
export(mo_shortname)
export(mo_species)
export(mo_subspecies)
export(mo_taxonomy)
export(mo_type)
export(mo_uncertainties)
export(mo_url)
export(mo_year)
export(mrgn)
export(n_rsi)
export(p.symbol)
export(portion_I)
export(portion_IR)
export(portion_R)
export(portion_S)
export(portion_SI)
export(portion_df)
export(ratio)
export(read.4D)
export(resistance_predict)
export(right_join_microorganisms)
export(rsi_predict)
export(scale_rsi_colours)
export(scale_y_percent)
export(semi_join_microorganisms)
export(set_mo_source)
export(skewness)
export(theme_rsi)
export(top_freq)
exportMethods(as.data.frame.ab)
exportMethods(as.data.frame.atc)
exportMethods(as.data.frame.frequency_tbl)
exportMethods(as.data.frame.mo)
exportMethods(as.double.mic)
exportMethods(as.integer.mic)
exportMethods(as.numeric.mic)
exportMethods(as.vector.frequency_tbl)
exportMethods(as_tibble.frequency_tbl)
exportMethods(barplot.mic)
exportMethods(barplot.rsi)
exportMethods(diff.frequency_tbl)
exportMethods(droplevels.mic)
exportMethods(droplevels.rsi)
exportMethods(format.frequency_tbl)
exportMethods(hist.frequency_tbl)
exportMethods(kurtosis)
exportMethods(kurtosis.data.frame)
exportMethods(kurtosis.default)
exportMethods(kurtosis.matrix)
exportMethods(plot.frequency_tbl)
exportMethods(plot.mic)
exportMethods(plot.rsi)
exportMethods(print.ab)
exportMethods(print.atc)
exportMethods(print.catalogue_of_life_version)
exportMethods(print.disk)
exportMethods(print.frequency_tbl)
exportMethods(print.mic)
exportMethods(print.mo)
exportMethods(print.mo_renamed)
exportMethods(print.mo_uncertainties)
exportMethods(print.rsi)
exportMethods(pull.ab)
exportMethods(pull.atc)
exportMethods(pull.mo)
exportMethods(select.frequency_tbl)
exportMethods(skewness)
exportMethods(skewness.data.frame)
exportMethods(skewness.default)
exportMethods(skewness.matrix)
exportMethods(summary.mic)
exportMethods(summary.mo)
exportMethods(summary.rsi)
importFrom(crayon,bgGreen)
importFrom(crayon,bgRed)
importFrom(crayon,bgYellow)
importFrom(crayon,black)
importFrom(crayon,blue)
importFrom(crayon,bold)
importFrom(crayon,green)
importFrom(crayon,has_color)
importFrom(crayon,italic)
importFrom(crayon,magenta)
importFrom(crayon,red)
importFrom(crayon,silver)
importFrom(crayon,strip_style)
importFrom(crayon,underline)
importFrom(crayon,white)
importFrom(crayon,yellow)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,setkey)
importFrom(dplyr,"%>%")
importFrom(dplyr,all_vars)
importFrom(dplyr,any_vars)
importFrom(dplyr,arrange)
importFrom(dplyr,arrange_at)
importFrom(dplyr,as_tibble)
importFrom(dplyr,between)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,filter_all)
importFrom(dplyr,filter_at)
importFrom(dplyr,full_join)
importFrom(dplyr,funs)
importFrom(dplyr,group_by)
importFrom(dplyr,group_by_at)
importFrom(dplyr,group_vars)
importFrom(dplyr,if_else)
importFrom(dplyr,lag)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_all)
importFrom(dplyr,mutate_at)
importFrom(dplyr,n)
importFrom(dplyr,n_distinct)
importFrom(dplyr,n_groups)
importFrom(dplyr,progress_estimated)
importFrom(dplyr,pull)
importFrom(dplyr,row_number)
importFrom(dplyr,select)
importFrom(dplyr,select_if)
importFrom(dplyr,slice)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_if)
importFrom(dplyr,tibble)
importFrom(dplyr,top_n)
importFrom(dplyr,transmute)
importFrom(dplyr,ungroup)
importFrom(dplyr,vars)
importFrom(grDevices,boxplot.stats)
importFrom(graphics,arrows)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,hist)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(hms,is.hms)
importFrom(knitr,kable)
importFrom(microbenchmark,microbenchmark)
importFrom(rlang,as_label)
importFrom(rlang,enquos)
importFrom(rlang,eval_tidy)
importFrom(stats,complete.cases)
importFrom(stats,fivenum)
importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,mad)
importFrom(stats,pchisq)
importFrom(stats,predict)
importFrom(stats,sd)
importFrom(utils,browseURL)
importFrom(utils,browseVignettes)
importFrom(utils,installed.packages)