mirror of https://github.com/msberends/AMR.git
29 lines
1.1 KiB
R
29 lines
1.1 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/first_isolates.R
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\name{key_antibiotics}
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\alias{key_antibiotics}
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\title{Key antibiotics based on bacteria ID}
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\usage{
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key_antibiotics(tbl, col_bactcode = "bacteriecode", info = TRUE,
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amcl = "amcl", amox = "amox", cfot = "cfot", cfta = "cfta",
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cftr = "cftr", cfur = "cfur", cipr = "cipr", clar = "clar",
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clin = "clin", clox = "clox", doxy = "doxy", gent = "gent",
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line = "line", mero = "mero", peni = "peni", pita = "pita",
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rifa = "rifa", teic = "teic", trsu = "trsu", vanc = "vanc")
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}
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\arguments{
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\item{tbl}{table with antibiotics coloms, like \code{amox} and \code{amcl}.}
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\item{col_bactcode}{column of bacteria IDs in \code{tbl}; these should occur in \code{bactlist$bactid}, see \code{\link{bactlist}}}
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\item{info}{print warnings}
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\item{amcl, amox, cfot, cfta, cftr, cfur, cipr, clar, clin, clox, doxy, gent, line, mero, peni, pita, rifa, teic, trsu, vanc}{column names of antibiotics.}
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}
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\description{
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Key antibiotics based on bacteria ID
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}
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\seealso{
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\code{\link{mo_property}} \code{\link{ablist}}
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}
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