Claude 6912c9deee Reproduce clinical breakpoints from latest WHONET/AMRIE data ...

- Ran reproduction_of_microorganisms.groups.R and reproduction_of_clinical_breakpoints.R
  against the latest WHONET/AMRIE source (includes EUCAST 2026, CLSI 2025)
- Updated data/clinical_breakpoints.rda, microorganisms.codes.rda, microorganisms.groups.rda,
  and data-raw/organisms.rds
- Fixed reproduction_of_microorganisms.groups.R: replaced base ifelse() with dplyr::if_else()
  to preserve the <mo> S3 class; base ifelse() strips class attributes, causing
  bind_rows() to fail with strict vctrs type checking in dplyr >= 1.1.0
- Added data-raw/_run_reproduction.R: non-interactive wrapper that overrides View(),
  sets UTF-8 locale, and sources both scripts in the correct order

https://claude.ai/code/session_01S5vMqfsiJb59RN2Gyz1tDY

2026-03-26 06:01:17 +00:00

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