mirror of https://github.com/msberends/AMR.git
44 lines
1.3 KiB
R
Executable File
44 lines
1.3 KiB
R
Executable File
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/mic.R
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\name{as.mic}
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\alias{as.mic}
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\alias{is.mic}
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\title{Class 'mic'}
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\usage{
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as.mic(x, na.rm = FALSE)
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is.mic(x)
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}
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\arguments{
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\item{x}{vector}
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\item{na.rm}{a logical indicating whether missing values should be removed}
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}
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\value{
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Ordered factor with new class \code{mic}
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}
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\description{
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This transforms a vector to a new class \code{mic}, which is an ordered factor with valid MIC values as levels. Invalid MIC values will be translated as \code{NA} with a warning.
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}
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\section{Read more on our website!}{
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\if{html}{\figure{logo.png}{options: height=40px style=margin-bottom:5px} \cr}
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On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a omprehensive tutorial} about how to conduct AMR analysis and find \href{https://msberends.gitlab.io/AMR/reference}{the complete documentation of all functions}, which reads a lot easier than in R.
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}
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\examples{
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mic_data <- as.mic(c(">=32", "1.0", "1", "1.00", 8, "<=0.128", "8", "16", "16"))
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is.mic(mic_data)
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# this can also coerce combined MIC/RSI values:
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as.mic("<=0.002; S") # will return <=0.002
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plot(mic_data)
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barplot(mic_data)
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freq(mic_data)
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}
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\seealso{
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\code{\link{as.rsi}}
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}
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\keyword{mic}
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