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46 lines
2.2 KiB
R
46 lines
2.2 KiB
R
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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# SOURCE #
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# https://gitlab.com/msberends/AMR #
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# #
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# LICENCE #
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# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# #
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# This R package was created for academic research and was publicly #
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# released in the hope that it will be useful, but it comes WITHOUT #
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# ANY WARRANTY OR LIABILITY. #
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# Visit our website for more info: https://msberends.gitab.io/AMR. #
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# ==================================================================== #
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context("guess_ab_col.R")
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test_that("guess_ab_col works", {
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expect_equal(guess_ab_col(septic_patients, "amox"),
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"amox")
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expect_equal(guess_ab_col(septic_patients, "amoxicillin"),
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"amox")
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expect_equal(guess_ab_col(septic_patients, "J01AA07"),
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"tetr")
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expect_equal(guess_ab_col(septic_patients, "tetracycline"),
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"tetr")
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expect_equal(guess_ab_col(septic_patients, "TETR"),
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"tetr")
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df <- data.frame(AMP_ND10 = "R",
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AMC_ED20 = "S")
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expect_equal(guess_ab_col(df, "ampicillin"),
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"AMP_ND10")
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expect_equal(guess_ab_col(df, "J01CR02"),
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"AMC_ED20")
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expect_equal(guess_ab_col(df, as.atc("augmentin")),
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"AMC_ED20")
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})
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