AMR/tests/testthat/test-abname.R

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2.3 KiB
R

# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# SOURCE #
# https://gitlab.com/msberends/AMR #
# #
# LICENCE #
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# This R package was created for academic research and was publicly #
# released in the hope that it will be useful, but it comes WITHOUT #
# ANY WARRANTY OR LIABILITY. #
# Visit our website for more info: https://msberends.gitab.io/AMR. #
# ==================================================================== #
context("abname.R")
test_that("abname works", {
expect_equal(abname("AMOX"), "Amoxicillin")
expect_equal(abname(c("AMOX", "GENT")), c("Amoxicillin", "Gentamicin"))
expect_equal(abname(c("AMOX+GENT")), "Amoxicillin + gentamicin")
expect_equal(abname("AMOX", from = 'umcg'), "Amoxicillin")
expect_equal(abname("amox", from = 'certe', tolower = TRUE), "amoxicillin")
expect_equal(abname("J01CA04", from = 'atc'), "Amoxicillin")
expect_equal(abname(c("amox", "J01CA04", "Trimox", "dispermox", "Amoxil")),
rep("Amoxicillin", 5))
expect_equal(abname("AMOX", to = 'atc'), "J01CA04")
expect_error(abname("AMOX", to = c(1:3)))
expect_error(abname("AMOX", to = "test"))
expect_warning(abname("NOTEXISTING
"))
expect_warning(abname("AMOX or GENT"))
# this one is being found with as.atc internally
expect_equal(abname("flu_clox123"), "Flucloxacillin")
})