Nick Thomson 68442f3042 (v3.0.0.9012) Python wrapper fix

2025-07-17 19:43:07 +02:00

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_reproduction_scripts

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datasets

(v2.1.1.9286) deprecate antibiotics better, add ATC for ceftaroline

2025-06-01 11:54:40 +02:00

_generate_GPT_knowledge_input.sh

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_generate_python_wrapper.sh

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_language_update.R

(v2.1.1.9269) Support 7 new languages

2025-05-02 19:25:19 +02:00

_pre_commit_checks.R

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ab.md5

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AMR intro.jpg

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AMR new logo.txt

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AMR_intro.ai

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AMR_vet.html

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AMR_vet.qmd

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AMRforRGPT_python.pdf

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AMRforRGPT_python.pptx

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AMRforRGPT_python.svg

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AMRforRGPT.pdf

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AMRforRGPT.pptx

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AMRforRGPT.svg

(v2.1.1.9235) New website!

2025-04-08 15:54:30 +01:00

av.md5

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bacdive.csv

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bartlett_et_al_2022_human_pathogens.xlsx

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clin_break.md5

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create_survey_page.R

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dosage.md5

(v2.1.1.9247) CLSI/EUCAST 2025!

2025-04-20 12:55:31 +02:00

Dosages_v_11.0_Breakpoint_Tables.xlsx

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Dosages_v_12.0_Breakpoint_Tables.pdf

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Dosages_v_12.0_Breakpoint_Tables.xlsx

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Dosages_v_13.0_Breakpoint_Tables.pdf

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Dosages_v_13.0_Breakpoint_Tables.xlsx

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eucast_rules.tsv

(v2.1.1.9247) CLSI/EUCAST 2025!

2025-04-20 12:55:31 +02:00

Expected_Resistant_Phenotypes_v1.2_20230113.pdf

(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex

2025-03-26 17:19:17 +01:00

extractATCs.R

(v2.1.1.9217) allow + in amr selectors

2025-03-18 16:35:22 +01:00

Intrinsic_Resistance_and_Unusual_Phenotypes_Tables_v3.3_20211018.pdf

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intrinsic_resistant.md5

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intrinsicR.md5

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logo.old.svg

new logo

2024-02-25 14:20:43 +01:00

logo.svg

(v2.1.1.9082) algorithm updates

2024-09-30 18:46:55 +02:00

Loinc.csv

prepare for CRAN

2023-10-20 14:51:48 +02:00

loinc.R

(v2.1.1.9236) documentation

2025-04-12 11:46:42 +02:00

microorganisms.codes.md5

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microorganisms.groups.md5

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microorganisms.md5

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mo.md5

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organisms.rds

(v2.1.1.9247) CLSI/EUCAST 2025!

2025-04-20 12:55:31 +02:00

poorman_prepend.R

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Preference animal species groups.xlsx

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read_EUCAST.R

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salmonellae.R

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salmonellae.rds

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salonella_fix.R

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sensititre_ab.R

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sensititre_mo.R

(v2.1.1.9272) mo codes sensititre

2025-05-04 18:50:25 +02:00

SNOMED_PHVS_Microorganism_CDC_V12.txt

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species groups.R

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Species groups.xlsx

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taxonomy0.rds

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taxonomy1.rds

(v2.1.1.9081) HUGE microorganisms update for fungi!

2024-09-29 22:17:56 +02:00

taxonomy1b.rds

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taxonomy1c.rds

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taxonomy2.rds

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taxonomy2b.rds

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taxonomy2c.rds

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taxonomy3.rds

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taxonomy3b.rds

(v2.1.1.9081) HUGE microorganisms update for fungi!

2024-09-29 22:17:56 +02:00

taxonomy_gbif.rds

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taxonomy_lpsn_missing.rds

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

taxonomy_lpsn.rds

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taxonomy_mycobank.rds

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toxoplasma.R

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translations.tsv

(v2.1.1.9270) Add support for Korean, fix ATCs

2025-05-04 14:24:43 +02:00

v_10.0_Breakpoint_Tables.xlsx

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v_11.0_Breakpoint_Tables.xlsx

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v_12.0_Breakpoint_Tables.xlsx

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v_13.0_Breakpoint_Tables.xlsx

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v_13.1_Breakpoint_Tables.xlsx

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v_14.0_Breakpoint_Tables.xlsx

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v_15.0_Breakpoint_Tables.xlsx

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whonet_bugfixes.R

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wisca_params.xlsx

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wisca_reprex.R

(v2.1.1.9260) fix antibiogram

2025-04-29 16:15:18 +02:00

wisca.xlsx

(v2.1.1.9193) new antimicrobials for screening

2025-03-12 15:09:28 +01:00