mirror of
https://github.com/msberends/AMR.git
synced 2024-12-27 08:06:13 +01:00
49 lines
2.3 KiB
R
Executable File
49 lines
2.3 KiB
R
Executable File
# ==================================================================== #
|
|
# TITLE #
|
|
# Antimicrobial Resistance (AMR) Analysis #
|
|
# #
|
|
# SOURCE #
|
|
# https://gitlab.com/msberends/AMR #
|
|
# #
|
|
# LICENCE #
|
|
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
|
|
# #
|
|
# This R package is free software; you can freely use and distribute #
|
|
# it for both personal and commercial purposes under the terms of the #
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
|
# the Free Software Foundation. #
|
|
# #
|
|
# This R package was created for academic research and was publicly #
|
|
# released in the hope that it will be useful, but it comes WITHOUT #
|
|
# ANY WARRANTY OR LIABILITY. #
|
|
# Visit our website for more info: https://msberends.gitab.io/AMR. #
|
|
# ==================================================================== #
|
|
|
|
context("atc.R")
|
|
|
|
test_that("guess_atc works", {
|
|
expect_equal(as.character(guess_atc(c("J01FA01",
|
|
"Erythromycin",
|
|
"eryt",
|
|
"ERYT",
|
|
"ERY",
|
|
"Erythrocin",
|
|
"Eryzole",
|
|
"Pediamycin"))),
|
|
rep("J01FA01", 8))
|
|
|
|
expect_identical(class(as.atc("amox")), "atc")
|
|
expect_identical(class(pull(antibiotics, atc)), "atc")
|
|
expect_identical(atc_trivial_nl("Cefmenoxim"), "Cefmenoxim")
|
|
|
|
expect_warning(as.atc("Z00ZZ00")) # not yet available in data set
|
|
expect_warning(as.atc("UNKNOWN"))
|
|
|
|
expect_output(print(as.atc("amox")))
|
|
|
|
# first 5 chars of official name
|
|
expect_equal(as.character(as.atc(c("nitro", "cipro"))),
|
|
c("J01XE01", "J01MA02"))
|
|
|
|
})
|