- custom guideline names now correctly classify values as R: CLSI convention
(>= breakpoint_R for MIC, <= for disk) applies only when guideline contains
"CLSI"; all other guidelines including custom ones use the EUCAST convention
(> breakpoint_R for MIC, < for disk)
- guideline argument is now optional when reference_data is manually set: if
omitted or if its value does not match any row in the custom data, all rows
in reference_data are used; if set to a value present in the data, only
matching rows are filtered — useful for multi-guideline custom tables
- host = NA in custom reference_data now acts as a host-agnostic fallback
when no host-specific breakpoint row exists for the current animal species
- updated reference_data argument documentation to explain these conventions
https://claude.ai/code/session_01Q8KtFFGG9qrjAgLJBbxG2U
6ef7441d51