Claude 6ef7441d51 Fix custom reference_data support in as.sir() (fixes #239) ...

- custom guideline names now correctly classify values as R: CLSI convention
  (>= breakpoint_R for MIC, <= for disk) applies only when guideline contains
  "CLSI"; all other guidelines including custom ones use the EUCAST convention
  (> breakpoint_R for MIC, < for disk)
- guideline argument is now optional when reference_data is manually set: if
  omitted or if its value does not match any row in the custom data, all rows
  in reference_data are used; if set to a value present in the data, only
  matching rows are filtered — useful for multi-guideline custom tables
- host = NA in custom reference_data now acts as a host-agnostic fallback
  when no host-specific breakpoint row exists for the current animal species
- updated reference_data argument documentation to explain these conventions

https://claude.ai/code/session_01Q8KtFFGG9qrjAgLJBbxG2U

2026-04-25 08:20:40 +00:00

..

testthat

Fix custom reference_data support in as.sir() (fixes #239)

2026-04-25 08:20:40 +00:00

testthat.R

(v2.1.1.9236) documentation

2025-04-12 11:46:42 +02:00

tinytest.R.old

(v2.1.1.9236) documentation

2025-04-12 11:46:42 +02:00