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48 lines
2.4 KiB
R
Executable File
48 lines
2.4 KiB
R
Executable File
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Data Analysis for R #
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# #
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# SOURCE #
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# https://github.com/msberends/AMR #
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# #
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# LICENCE #
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# (c) 2018-2021 Berends MS, Luz CF et al. #
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# Developed at the University of Groningen, the Netherlands, in #
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# collaboration with non-profit organisations Certe Medical #
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# Diagnostics & Advice, and University Medical Center Groningen. #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# #
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# Visit our website for the full manual and a complete tutorial about #
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# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
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# ==================================================================== #
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#' Deprecated Functions
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#'
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#' These functions are so-called '[Deprecated]'. They will be removed in a future release. Using the functions will give a warning with the name of the function it has been replaced by (if there is one).
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#' @inheritSection lifecycle Retired Lifecycle
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#' @inheritSection AMR Read more on Our Website!
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#' @keywords internal
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#' @name AMR-deprecated
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#' @export
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p_symbol <- function(p, emptychar = " ") {
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.Deprecated(package = "AMR", new = "cleaner::p_symbol")
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p <- as.double(p)
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s <- rep(NA_character_, length(p))
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s[p <= 1] <- emptychar
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s[p <= 0.100] <- "."
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s[p <= 0.050] <- "*"
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s[p <= 0.010] <- "**"
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s[p <= 0.001] <- "***"
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s
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}
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