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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>License • AMR (for R)</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="apple-touch-icon-60x60.png"><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Lato-0.4.9/font.css" rel="stylesheet"><link href="deps/Fira_Code-0.4.9/font.css" rel="stylesheet"><link href="deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"><script src="extra.js"></script><meta property="og:title" content="License"><meta property="og:image" content="https://msberends.github.io/AMR/logo.svg"></head><body>
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<nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
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<a class="navbar-brand me-2" href="index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9087</small>
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<button class="nav-link dropdown-toggle" type="button" id="dropdown-how-to" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true"><span class="fa fa-question-circle"></span> How to</button>
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<ul class="dropdown-menu" aria-labelledby="dropdown-how-to"><li><a class="dropdown-item" href="articles/AMR.html"><span class="fa fa-directions"></span> Conduct AMR Analysis</a></li>
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<li><a class="dropdown-item" href="reference/antibiogram.html"><span class="fa fa-file-prescription"></span> Generate Antibiogram (Trad./Syndromic/WISCA)</a></li>
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<li><a class="dropdown-item" href="articles/resistance_predict.html"><span class="fa fa-dice"></span> Predict Antimicrobial Resistance</a></li>
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<li><a class="dropdown-item" href="articles/datasets.html"><span class="fa fa-database"></span> Download Data Sets for Own Use</a></li>
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<li><a class="dropdown-item" href="reference/AMR-options.html"><span class="fa fa-gear"></span> Set User- Or Team-specific Package Settings</a></li>
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<li><a class="dropdown-item" href="articles/PCA.html"><span class="fa fa-compress"></span> Conduct Principal Component Analysis for AMR</a></li>
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<li><a class="dropdown-item" href="articles/MDR.html"><span class="fa fa-skull-crossbones"></span> Determine Multi-Drug Resistance (MDR)</a></li>
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<li><a class="dropdown-item" href="articles/WHONET.html"><span class="fa fa-globe-americas"></span> Work with WHONET Data</a></li>
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<li><a class="dropdown-item" href="articles/EUCAST.html"><span class="fa fa-exchange-alt"></span> Apply Eucast Rules</a></li>
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<li><a class="dropdown-item" href="reference/ab_property.html"><span class="fa fa-capsules"></span> Get Properties of an Antibiotic Drug</a></li>
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<li><a class="dropdown-item" href="reference/av_property.html"><span class="fa fa-capsules"></span> Get Properties of an Antiviral Drug</a></li>
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<li class="nav-item"><a class="nav-link" href="articles/AMR_for_Python.html"><span class="fa fab fa-python"></span> AMR for Python</a></li>
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="logo.svg" class="logo" alt=""><h1>License</h1>
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</div>
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<pre>GNU GENERAL PUBLIC LICENSE
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Version 2, June 1991
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Copyright (C) 1989, 1991 Free Software Foundation, Inc., <http://fsf.org/>
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51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
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Everyone is permitted to copy and distribute verbatim copies
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of this license document, but changing it is not allowed.
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A SUMMARY OF THIS LICENSE BY THE ORIGINAL AUTHORS OF THE AMR R PACKAGE
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This R package, with package name 'AMR':
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- May be used for commercial purposes
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- May be used for private purposes
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- May NOT be used for patent purposes
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- May be modified, although:
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- Modifications MUST be released under the same license when distributing the package
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- Changes made to the code MUST be documented
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- May be distributed, although:
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- Source code MUST be made available when the package is distributed
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- A copy of the license and copyright notice MUST be included with the package.
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- Comes with a LIMITATION of liability
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- Comes with NO warranty
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END OF THE SUMMARY
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GNU GENERAL PUBLIC LICENSE
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TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
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0. This License applies to any program or other work which contains
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a notice placed by the copyright holder saying it may be distributed
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under the terms of this General Public License. The "Program", below,
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refers to any such program or work, and a "work based on the Program"
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means either the Program or any derivative work under copyright law:
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that is to say, a work containing the Program or a portion of it,
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either verbatim or with modifications and/or translated into another
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language. (Hereinafter, translation is included without limitation in
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the term "modification".) Each licensee is addressed as "you".
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Activities other than copying, distribution and modification are not
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covered by this License; they are outside its scope. The act of
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running the Program is not restricted, and the output from the Program
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is covered only if its contents constitute a work based on the
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Program (independent of having been made by running the Program).
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Whether that is true depends on what the Program does.
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1. You may copy and distribute verbatim copies of the Program's
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source code as you receive it, in any medium, provided that you
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conspicuously and appropriately publish on each copy an appropriate
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copyright notice and disclaimer of warranty; keep intact all the
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notices that refer to this License and to the absence of any warranty;
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and give any other recipients of the Program a copy of this License
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along with the Program.
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You may charge a fee for the physical act of transferring a copy, and
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you may at your option offer warranty protection in exchange for a fee.
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2. You may modify your copy or copies of the Program or any portion
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of it, thus forming a work based on the Program, and copy and
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distribute such modifications or work under the terms of Section 1
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above, provided that you also meet all of these conditions:
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a) You must cause the modified files to carry prominent notices
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stating that you changed the files and the date of any change.
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b) You must cause any work that you distribute or publish, that in
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whole or in part contains or is derived from the Program or any
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part thereof, to be licensed as a whole at no charge to all third
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parties under the terms of this License.
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c) If the modified program normally reads commands interactively
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when run, you must cause it, when started running for such
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interactive use in the most ordinary way, to print or display an
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announcement including an appropriate copyright notice and a
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notice that there is no warranty (or else, saying that you provide
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a warranty) and that users may redistribute the program under
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these conditions, and telling the user how to view a copy of this
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License. (Exception: if the Program itself is interactive but
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does not normally print such an announcement, your work based on
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the Program is not required to print an announcement.)
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These requirements apply to the modified work as a whole. If
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identifiable sections of that work are not derived from the Program,
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and can be reasonably considered independent and separate works in
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themselves, then this License, and its terms, do not apply to those
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sections when you distribute them as separate works. But when you
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distribute the same sections as part of a whole which is a work based
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on the Program, the distribution of the whole must be on the terms of
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this License, whose permissions for other licensees extend to the
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entire whole, and thus to each and every part regardless of who wrote it.
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Thus, it is not the intent of this section to claim rights or contest
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your rights to work written entirely by you; rather, the intent is to
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exercise the right to control the distribution of derivative or
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collective works based on the Program.
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In addition, mere aggregation of another work not based on the Program
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with the Program (or with a work based on the Program) on a volume of
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a storage or distribution medium does not bring the other work under
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the scope of this License.
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3. You may copy and distribute the Program (or a work based on it,
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under Section 2) in object code or executable form under the terms of
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Sections 1 and 2 above provided that you also do one of the following:
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a) Accompany it with the complete corresponding machine-readable
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source code, which must be distributed under the terms of Sections
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1 and 2 above on a medium customarily used for software interchange; or,
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b) Accompany it with a written offer, valid for at least three
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years, to give any third party, for a charge no more than your
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cost of physically performing source distribution, a complete
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machine-readable copy of the corresponding source code, to be
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distributed under the terms of Sections 1 and 2 above on a medium
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customarily used for software interchange; or,
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c) Accompany it with the information you received as to the offer
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to distribute corresponding source code. (This alternative is
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allowed only for noncommercial distribution and only if you
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received the program in object code or executable form with such
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an offer, in accord with Subsection b above.)
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The source code for a work means the preferred form of the work for
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making modifications to it. For an executable work, complete source
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code means all the source code for all modules it contains, plus any
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associated interface definition files, plus the scripts used to
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control compilation and installation of the executable. However, as a
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special exception, the source code distributed need not include
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anything that is normally distributed (in either source or binary
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form) with the major components (compiler, kernel, and so on) of the
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operating system on which the executable runs, unless that component
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itself accompanies the executable.
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If distribution of executable or object code is made by offering
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access to copy from a designated place, then offering equivalent
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access to copy the source code from the same place counts as
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distribution of the source code, even though third parties are not
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compelled to copy the source along with the object code.
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4. You may not copy, modify, sublicense, or distribute the Program
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except as expressly provided under this License. Any attempt
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otherwise to copy, modify, sublicense or distribute the Program is
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void, and will automatically terminate your rights under this License.
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However, parties who have received copies, or rights, from you under
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this License will not have their licenses terminated so long as such
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parties remain in full compliance.
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5. You are not required to accept this License, since you have not
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signed it. However, nothing else grants you permission to modify or
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distribute the Program or its derivative works. These actions are
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prohibited by law if you do not accept this License. Therefore, by
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modifying or distributing the Program (or any work based on the
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Program), you indicate your acceptance of this License to do so, and
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all its terms and conditions for copying, distributing or modifying
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the Program or works based on it.
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6. Each time you redistribute the Program (or any work based on the
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Program), the recipient automatically receives a license from the
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original licensor to copy, distribute or modify the Program subject to
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these terms and conditions. You may not impose any further
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restrictions on the recipients' exercise of the rights granted herein.
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You are not responsible for enforcing compliance by third parties to
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this License.
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7. If, as a consequence of a court judgment or allegation of patent
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infringement or for any other reason (not limited to patent issues),
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conditions are imposed on you (whether by court order, agreement or
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otherwise) that contradict the conditions of this License, they do not
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excuse you from the conditions of this License. If you cannot
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distribute so as to satisfy simultaneously your obligations under this
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License and any other pertinent obligations, then as a consequence you
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may not distribute the Program at all. For example, if a patent
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license would not permit royalty-free redistribution of the Program by
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all those who receive copies directly or indirectly through you, then
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the only way you could satisfy both it and this License would be to
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refrain entirely from distribution of the Program.
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If any portion of this section is held invalid or unenforceable under
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any particular circumstance, the balance of the section is intended to
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apply and the section as a whole is intended to apply in other
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circumstances.
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It is not the purpose of this section to induce you to infringe any
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patents or other property right claims or to contest validity of any
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such claims; this section has the sole purpose of protecting the
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integrity of the free software distribution system, which is
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implemented by public license practices. Many people have made
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generous contributions to the wide range of software distributed
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through that system in reliance on consistent application of that
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system; it is up to the author/donor to decide if he or she is willing
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to distribute software through any other system and a licensee cannot
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impose that choice.
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This section is intended to make thoroughly clear what is believed to
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be a consequence of the rest of this License.
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8. If the distribution and/or use of the Program is restricted in
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certain countries either by patents or by copyrighted interfaces, the
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original copyright holder who places the Program under this License
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may add an explicit geographical distribution limitation excluding
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those countries, so that distribution is permitted only in or among
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countries not thus excluded. In such case, this License incorporates
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the limitation as if written in the body of this License.
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9. The Free Software Foundation may publish revised and/or new versions
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of the General Public License from time to time. Such new versions will
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be similar in spirit to the present version, but may differ in detail to
|
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address new problems or concerns.
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Each version is given a distinguishing version number. If the Program
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specifies a version number of this License which applies to it and "any
|
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later version", you have the option of following the terms and conditions
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either of that version or of any later version published by the Free
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Software Foundation. If the Program does not specify a version number of
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this License, you may choose any version ever published by the Free Software
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Foundation.
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10. If you wish to incorporate parts of the Program into other free
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programs whose distribution conditions are different, write to the author
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to ask for permission. For software which is copyrighted by the Free
|
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Software Foundation, write to the Free Software Foundation; we sometimes
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make exceptions for this. Our decision will be guided by the two goals
|
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of preserving the free status of all derivatives of our free software and
|
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of promoting the sharing and reuse of software generally.
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NO WARRANTY
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11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
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FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN
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OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
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PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
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OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
|
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MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS
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TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE
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PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
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REPAIR OR CORRECTION.
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12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
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WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
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REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
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INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
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OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
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TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
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YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
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PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
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POSSIBILITY OF SUCH DAMAGES.
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END OF TERMS AND CONDITIONS
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</pre>
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</main></div>
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<footer><div class="pkgdown-footer-left">
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<p><code>AMR</code> (for R). Free and open-source, licenced under the <a target="_blank" href="https://github.com/msberends/AMR/blob/main/LICENSE" class="external-link">GNU General Public License version 2.0 (GPL-2)</a>.<br>Developed at the <a target="_blank" href="https://www.rug.nl" class="external-link">University of Groningen</a> and <a target="_blank" href="https://www.umcg.nl" class="external-link">University Medical Center Groningen</a> in The Netherlands.</p>
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</div>
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<div class="pkgdown-footer-right">
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<p><a target="_blank" href="https://www.rug.nl" class="external-link"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/assets/logo_rug.svg" style="max-width: 150px;"></a><a target="_blank" href="https://www.umcg.nl" class="external-link"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/assets/logo_umcg.svg" style="max-width: 150px;"></a></p>
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