mirror of https://github.com/msberends/AMR.git
105 lines
5.8 KiB
JavaScript
105 lines
5.8 KiB
JavaScript
/*
|
|
# ==================================================================== #
|
|
# TITLE #
|
|
# Antimicrobial Resistance (AMR) Analysis #
|
|
# #
|
|
# SOURCE #
|
|
# https://github.com/msberends/AMR #
|
|
# #
|
|
# LICENCE #
|
|
# (c) 2018-2020 Berends MS, Luz CF et al. #
|
|
# #
|
|
# This R package is free software; you can freely use and distribute #
|
|
# it for both personal and commercial purposes under the terms of the #
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
|
# the Free Software Foundation. #
|
|
# #
|
|
# We created this package for both routine data analysis and academic #
|
|
# research and it was publicly released in the hope that it will be #
|
|
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
|
|
# Visit our website for more info: https://msberends.github.io/AMR. #
|
|
# ==================================================================== #
|
|
*/
|
|
|
|
// Add updated Font Awesome 5.8.2 library
|
|
$('head').append('<!-- Updated Font Awesome library --><link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.8.2/css/all.css">');
|
|
|
|
// Email template for new GitLab issues
|
|
//https://stackoverflow.com/a/33190494/4575331
|
|
//incoming+msberends-amr-9011429-5miwzuo1xo70wbz9r6fwv4dmg-issue@incoming.gitlab.com
|
|
|
|
$( document ).ready(function() {
|
|
|
|
// add SurveyMonkey
|
|
// $('body').append('<script>(function(t,e,s,o){var n,a,c;t.SMCX=t.SMCX||[],e.getElementById(o)||(n=e.getElementsByTagName(s),a=n[n.length-1],c=e.createElement(s),c.type="text/javascript",c.async=!0,c.id=o,c.src=["https:"===location.protocol?"https://":"http://","widget.surveymonkey.com/collect/website/js/tRaiETqnLgj758hTBazgd_2BrwaGaWbg59AiLjNGdPaaJiBHKqgXKIw46VauwBvZ67.js"].join(""),a.parentNode.insertBefore(c,a))})(window,document,"script","smcx-sdk");</script>');
|
|
// add link to survey at home sidebar
|
|
// $('.template-home #sidebar .list-unstyled:first').append('<li><strong>Please fill in our survey at</strong> <br><a href="https://www.surveymonkey.com/r/AMR_for_R" target="_blank">https://www.surveymonkey.com/r/AMR_for_R</a></li>');
|
|
|
|
|
|
// remove version label from header
|
|
$(".version.label").remove();
|
|
|
|
// redirect to GitLab
|
|
var url_old = window.location.href;
|
|
var url_new = url_old.replace("github", "gitlab");
|
|
if (url_old != url_new) {
|
|
window.location.replace(url_new);
|
|
}
|
|
|
|
// Replace 'Value' in manual to 'Returned value'
|
|
$(".template-reference-topic h2#value").text("Returned value");
|
|
|
|
// PR for 'R for Data Science' on How To pages
|
|
if ($(".template-article").length > 0) {
|
|
$('#sidebar').prepend(
|
|
'<div id="r4ds">' +
|
|
' <a target="_blank" href="https://r4ds.had.co.nz/">' +
|
|
' Learn R reading this great book: R for Data Science.' +
|
|
' <br><br>' +
|
|
' Click to read it online - it was published for free.' +
|
|
' <img src="https://gitlab.com/msberends/AMR/raw/master/docs/cover_r4ds.png" height="100px">' +
|
|
' </a> ' +
|
|
' <hr>' +
|
|
'</div>');
|
|
}
|
|
|
|
// edit footer
|
|
$('footer').html(
|
|
'<div>' +
|
|
'<p><code>AMR</code> (for R). Developed at the <a href="https://www.rug.nl">University of Groningen</a> in collaboration with non-profit organisations <a href="https://www.certe.nl">Certe Medical Diagnostics and Advice</a> and <a href="https://www.umcg.nl">University Medical Center Groningen</a>.</p>' +
|
|
'<a href="https://www.rug.nl"><img src="https://gitlab.com/msberends/AMR/raw/master/docs/logo_rug.png" class="footer_logo"></a>' +
|
|
'</div>');
|
|
// all links should open in new tab/window
|
|
$('footer').html($('footer').html().replace(/href/g, 'target="_blank" href'));
|
|
|
|
// doctoral titles of authors
|
|
function doct_tit(x) {
|
|
if (typeof(x) != "undefined") {
|
|
// authors
|
|
x = x.replace(/Author, maintainer/g, "Main developer");
|
|
x = x.replace(/Author, contributor/g, "Main contributor");
|
|
x = x.replace(/Author, thesis advisor/g, "Doctoral advisor");
|
|
x = x.replace("Alex", "Prof. Dr. Alex");
|
|
x = x.replace("Bhanu", "Prof. Dr. Bhanu");
|
|
x = x.replace("Casper", "Prof. Dr. Casper");
|
|
x = x.replace("Corinna", "Dr. Corinna");
|
|
// others
|
|
x = x.replace("Bart", "Dr. Bart");
|
|
x = x.replace("Sofia", "Dr. Sofia");
|
|
x = x.replace("Dennis", "Dr. Dennis");
|
|
x = x.replace("Judith", "Dr. Judith");
|
|
x = x.replace("Gwen", "Dr. Gwen");
|
|
}
|
|
return(x);
|
|
}
|
|
$(".template-authors").html(doct_tit($(".template-authors").html()));
|
|
$(".template-citation-authors").html(doct_tit($(".template-citation-authors").html()));
|
|
$(".developers").html(doct_tit($(".developers").html()));
|
|
// $("footer").html(doct_tit($("footer").html()));
|
|
|
|
// Edit title of manual
|
|
$('.template-reference-index h1').text('Manual');
|
|
});
|
|
|
|
$('head').append("<!-- Matomo --><script type='text/javascript'> var _paq = _paq || []; /* tracker methods like 'setCustomDimension' should be called before 'trackPageView' */ _paq.push(['setDomains', ['*.msberends.gitlab.io/AMR']]); _paq.push(['enableCrossDomainLinking']); _paq.push(['trackPageView']); _paq.push(['enableLinkTracking']); (function() { var u='https://analyse.uscloud.nl/'; _paq.push(['setTrackerUrl', u+'piwik.php']); _paq.push(['setSiteId', '3']); var d=document, g=d.createElement('script'), s=d.getElementsByTagName('script')[0]; g.type='text/javascript'; g.async=true; g.defer=true; g.src=u+'piwik.js'; s.parentNode.insertBefore(g,s); })();</script><!-- End Matomo Code -->");
|