dr. M.S. (Matthijs) Berends 7f1ae1f474 (v2.1.1.9203) unit tests

2025-03-15 13:25:23 +01:00

..

aa_amr-package.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

aa_globals.R

(v2.1.1.9198) support eucast expert rules 14 and 13.1

2025-03-14 10:10:35 +01:00

aa_helper_functions.R

(v2.1.1.9199) fix eucast

2025-03-14 13:43:22 +01:00

aa_helper_pm_functions.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

aa_options.R

(v2.1.1.9200) new argument capped_mic_handling, add Search to website

2025-03-14 17:01:50 +01:00

ab_from_text.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

ab_property.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

ab.R

(v2.1.1.9200) new argument capped_mic_handling, add Search to website

2025-03-14 17:01:50 +01:00

age.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

amr_selectors.R

(v2.1.1.9198) support eucast expert rules 14 and 13.1

2025-03-14 10:10:35 +01:00

antibiogram.R

(v2.1.1.9191) unit tests

2025-03-10 12:16:45 +01:00

atc_online.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

av_from_text.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

av_property.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

av.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

availability.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

bug_drug_combinations.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

count.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

custom_antimicrobials.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

custom_eucast_rules.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

custom_microorganisms.R

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

data.R

(v2.1.1.9198) support eucast expert rules 14 and 13.1

2025-03-14 10:10:35 +01:00

disk.R

(v2.1.1.9182) fix AMR selectors for tidymodels, add unit tests

2025-03-03 12:59:27 +01:00

eucast_rules.R

(v2.1.1.9198) support eucast expert rules 14 and 13.1

2025-03-14 10:10:35 +01:00

export_biosample.R

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

first_isolate.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

g.test.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

get_episode.R

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

ggplot_pca.R

(v2.1.1.9131) implement testthat

2025-01-27 21:43:10 +01:00

ggplot_sir.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

guess_ab_col.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

italicise_taxonomy.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

join_microorganisms.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

key_antimicrobials.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

kurtosis.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

like.R

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

mdro.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

mean_amr_distance.R

(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'

2025-01-17 12:09:39 +01:00

mic.R

(v2.1.1.9194) new argument for missing R breakpoints - updated from WHONET

2025-03-12 16:24:38 +01:00

mo_matching_score.R

(v2.1.1.9133) update math formulae

2025-01-27 22:43:35 +01:00

mo_property.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

mo_source.R

(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'

2025-01-17 12:09:39 +01:00

mo.R

(v2.1.1.9199) fix eucast

2025-03-14 13:43:22 +01:00

pca.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

plotting.R

(v2.1.1.9186) replace antibiotics with antimicrobials!

2025-03-07 20:43:26 +01:00

proportion.R

(v2.1.1.9190) antibiotics deprecation in antibiogram()

2025-03-09 10:41:11 +01:00

random.R

(v2.1.1.9194) new argument for missing R breakpoints - updated from WHONET

2025-03-12 16:24:38 +01:00

resistance_predict.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

sir_calc.R

(v2.1.1.9190) antibiotics deprecation in antibiogram()

2025-03-09 10:41:11 +01:00

sir_df.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

sir.R

(v2.1.1.9203) unit tests

2025-03-15 13:25:23 +01:00

skewness.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

sysdata.rda

(v2.1.1.9198) support eucast expert rules 14 and 13.1

2025-03-14 10:10:35 +01:00

top_n_microorganisms.R

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

translate.R

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

vctrs.R

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

whocc.R

(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update

2024-07-16 14:53:17 +02:00

zz_deprecated.R

(v2.1.1.9200) new argument capped_mic_handling, add Search to website

2025-03-14 17:01:50 +01:00

zzz.R

(v2.1.1.9190) antibiotics deprecation in antibiogram()

2025-03-09 10:41:11 +01:00