mirror of
https://github.com/msberends/AMR.git
synced 2024-12-26 06:46:11 +01:00
19 lines
665 B
R
19 lines
665 B
R
g <- certetoolbox::import_clipboard()
|
|
g <- g %>% as_tibble()
|
|
g
|
|
for (i in seq_len(nrow(g))) {
|
|
if (is.na(g$taxonomy_from[i])) next
|
|
mo <- as.mo(g$taxonomy_from[i])
|
|
g$phylum[i] <- mo_phylum(mo)
|
|
g$class[i] <- mo_class(mo)
|
|
g$order[i] <- mo_order(mo)
|
|
g$family[i] <- mo_family(mo)
|
|
g$genus[i] <- mo_genus(mo)
|
|
g$species[i] <- paste(mo_species(mo), "complex")
|
|
g$lpsn_parent[i] <- mo_property(mo, property = "lpsn_parent")
|
|
g$gbif_parent[i] <- mo_property(mo, property = "gbif_parent")
|
|
g$oxygen_tolerance[i] <- mo_property(mo, property = "oxygen_tolerance")
|
|
g$prevalence[i] <- mo_property(mo, property = "prevalence")
|
|
}
|
|
certetoolbox::export_clipboard(g)
|