mirror of
https://github.com/msberends/AMR.git
synced 2024-12-26 22:06:11 +01:00
80 lines
3.5 KiB
YAML
80 lines
3.5 KiB
YAML
# ==================================================================== #
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# TITLE: #
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# AMR: An R Package for Working with Antimicrobial Resistance Data #
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# #
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# SOURCE CODE: #
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# https://github.com/msberends/AMR #
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# #
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# PLEASE CITE THIS SOFTWARE AS: #
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# Berends MS, Luz CF, Friedrich AW, et al. (2022). #
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# AMR: An R Package for Working with Antimicrobial Resistance Data. #
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# Journal of Statistical Software, 104(3), 1-31. #
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# https://doi.org/10.18637/jss.v104.i03 #
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# #
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# Developed at the University of Groningen and the University Medical #
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# Center Groningen in The Netherlands, in collaboration with many #
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# colleagues from around the world, see our website. #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# #
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# Visit our website for the full manual and a complete tutorial about #
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# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
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# ==================================================================== #
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# Create a website from the R documentation using pkgdown
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# Git commit and push to the 'gh-pages' branch
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on:
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push:
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# only on main
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branches: 'main'
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name: Update website
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jobs:
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update-website:
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runs-on: ubuntu-latest
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continue-on-error: true
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steps:
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- uses: actions/checkout@v3
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with:
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# this is to keep timestamps, the default fetch-depth: 1 gets the timestamps of the moment of cloning
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# we need this for the download page on our website - dates must be of the files, not of the latest git push
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fetch-depth: 0
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- name: Preserve timestamps
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run: |
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sudo apt install git-restore-mtime
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git restore-mtime
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- uses: r-lib/actions/setup-pandoc@v2
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- name: Set up R
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uses: r-lib/actions/setup-r@v2
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with:
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r-version: "release"
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# use RStudio Package Manager (RSPM) to quickly install packages
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use-public-rspm: true
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- name: Set up R dependencies
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uses: r-lib/actions/setup-r-dependencies@v2
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with:
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# add extra packages for website articles:
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extra-packages: |
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any::pkgdown
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any::tidymodels
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# Send updates to repo using GH Actions bot
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- name: Create website in separate branch
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run: |
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git config user.name "github-actions"
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git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
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Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE, clean = TRUE, install = TRUE, branch = "gh-pages")'
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