AMR/inst/tinytest/test-av_from_text.R

59 lines
2.8 KiB
R

# ==================================================================== #
# TITLE: #
# AMR: An R Package for Working with Antimicrobial Resistance Data #
# #
# SOURCE CODE: #
# https://github.com/msberends/AMR #
# #
# PLEASE CITE THIS SOFTWARE AS: #
# Berends MS, Luz CF, Friedrich AW, et al. (2022). #
# AMR: An R Package for Working with Antimicrobial Resistance Data. #
# Journal of Statistical Software, 104(3), 1-31. #
# https://doi.org/10.18637/jss.v104.i03 #
# #
# Developed at the University of Groningen and the University Medical #
# Center Groningen in The Netherlands, in collaboration with many #
# colleagues from around the world, see our website. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
expect_identical(
av_from_text("28/03/2020 regular aciclovir 500mg po tds")[[1]],
as.av("Aciclovir")
)
expect_identical(
av_from_text("28/03/2020 regular aciclovir 500mg po tds", thorough_search = TRUE)[[1]],
as.av("Aciclovir")
)
expect_identical(
av_from_text("28/03/2020 regular aciclovir 500mg po tds", thorough_search = FALSE)[[1]],
as.av("Aciclovir")
)
expect_identical(
av_from_text("28/03/2020 regular aciclovir 500mg po tds", translate_av = TRUE)[[1]],
"Aciclovir"
)
expect_identical(
av_from_text("administered aciclo and valaciclo", collapse = ", ")[[1]],
"ACI, VALA"
)
expect_identical(
av_from_text("28/03/2020 regular aciclo 500mg po tds", type = "dose")[[1]],
500
)
expect_identical(
av_from_text("28/03/2020 regular aciclo 500mg po tds", type = "admin")[[1]],
"oral"
)