mirror of
https://github.com/msberends/AMR.git
synced 2024-12-26 20:06:11 +01:00
f065945d7b
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115 * docs * implement ecoffs * unit tests
34 lines
1.8 KiB
R
34 lines
1.8 KiB
R
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/data.R
|
|
\docType{data}
|
|
\name{dosage}
|
|
\alias{dosage}
|
|
\title{Data Set with Treatment Dosages as Defined by EUCAST}
|
|
\format{
|
|
A \link[tibble:tibble]{tibble} with 503 observations and 9 variables:
|
|
\itemize{
|
|
\item \code{ab}\cr Antibiotic ID as used in this package (such as \code{AMC}), using the official EARS-Net (European Antimicrobial Resistance Surveillance Network) codes where available
|
|
\item \code{name}\cr Official name of the antimicrobial drug as used by WHONET/EARS-Net or the WHO
|
|
\item \code{type}\cr Type of the dosage, either "high_dosage", "standard_dosage", or "uncomplicated_uti"
|
|
\item \code{dose}\cr Dose, such as "2 g" or "25 mg/kg"
|
|
\item \code{dose_times}\cr Number of times a dose must be administered
|
|
\item \code{administration}\cr Route of administration, either "im", "iv", or "oral"
|
|
\item \code{notes}\cr Additional dosage notes
|
|
\item \code{original_txt}\cr Original text in the PDF file of EUCAST
|
|
\item \code{eucast_version}\cr Version number of the EUCAST Clinical Breakpoints guideline to which these dosages apply, either 13, 12, or 11
|
|
}
|
|
}
|
|
\usage{
|
|
dosage
|
|
}
|
|
\description{
|
|
EUCAST breakpoints used in this package are based on the dosages in this data set. They can be retrieved with \code{\link[=eucast_dosage]{eucast_dosage()}}.
|
|
}
|
|
\details{
|
|
Like all data sets in this package, this data set is publicly available for download in the following formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, SAS, and Stata. Please visit \href{https://msberends.github.io/AMR/articles/datasets.html}{our website for the download links}. The actual files are of course available on \href{https://github.com/msberends/AMR/tree/main/data-raw}{our GitHub repository}.
|
|
}
|
|
\examples{
|
|
dosage
|
|
}
|
|
\keyword{datasets}
|