mirror of https://github.com/msberends/AMR.git
38 lines
1.9 KiB
R
Executable File
38 lines
1.9 KiB
R
Executable File
# ==================================================================== #
|
|
# TITLE #
|
|
# Antimicrobial Resistance (AMR) Analysis #
|
|
# #
|
|
# SOURCE #
|
|
# https://gitlab.com/msberends/AMR #
|
|
# #
|
|
# LICENCE #
|
|
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
|
|
# #
|
|
# This R package is free software; you can freely use and distribute #
|
|
# it for both personal and commercial purposes under the terms of the #
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
|
# the Free Software Foundation. #
|
|
# #
|
|
# This R package was created for academic research and was publicly #
|
|
# released in the hope that it will be useful, but it comes WITHOUT #
|
|
# ANY WARRANTY OR LIABILITY. #
|
|
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
|
|
# ==================================================================== #
|
|
|
|
context("freq.R")
|
|
|
|
test_that("frequency table works", {
|
|
library(clean)
|
|
# mo
|
|
expect_true(is.freq(freq(example_isolates$mo)))
|
|
# for this to work, the output of mo_gramstain() is to be expected as follows:
|
|
expect_equal(mo_gramstain("B_ESCHR_COL"), "Gram-negative")
|
|
expect_equal(mo_gramstain("B_STPHY_AUR"), "Gram-positive")
|
|
|
|
# rsi
|
|
expect_true(is.freq(freq(example_isolates$AMX)))
|
|
library(dplyr)
|
|
expect_true(is.freq(example_isolates %>% freq(AMX)))
|
|
})
|
|
|