mirror of https://github.com/msberends/AMR.git
78 lines
3.3 KiB
R
78 lines
3.3 KiB
R
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis for R #
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# #
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# SOURCE #
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# https://github.com/msberends/AMR #
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# #
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# LICENCE #
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# (c) 2018-2021 Berends MS, Luz CF et al. #
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# Developed at the University of Groningen, the Netherlands, in #
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# collaboration with non-profit organisations Certe Medical #
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# Diagnostics & Advice, and University Medical Center Groningen. #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# #
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# Visit our website for the full manual and a complete tutorial about #
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# how to conduct AMR analysis: https://msberends.github.io/AMR/ #
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# ==================================================================== #
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context("age.R")
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test_that("age works", {
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skip_on_cran()
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expect_equal(age(x = c("1980-01-01", "1985-01-01", "1990-01-01"),
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reference = "2019-01-01"),
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c(39, 34, 29))
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expect_equal(age(x = c("2019-01-01", "2019-04-01", "2019-07-01"),
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reference = "2019-09-01",
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exact = TRUE),
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c(0.6656393, 0.4191781, 0.1698630),
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tolerance = 0.001)
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expect_error(age(x = c("1980-01-01", "1985-01-01", "1990-01-01"),
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reference = c("2019-01-01", "2019-01-01")))
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expect_warning(age(x = c("1980-01-01", "1985-01-01", "1990-01-01"),
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reference = "1975-01-01"))
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expect_warning(age(x = c("1800-01-01", "1805-01-01", "1810-01-01"),
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reference = "2019-01-01"))
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expect_equal(length(age(x = c("2019-01-01", NA), na.rm = TRUE)),
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1)
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})
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test_that("age_groups works", {
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skip_on_cran()
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ages <- c(3, 8, 16, 54, 31, 76, 101, 43, 21)
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expect_equal(length(unique(age_groups(ages, 50))),
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2)
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expect_equal(length(unique(age_groups(ages, c(50, 60)))),
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3)
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expect_identical(class(age_groups(ages, "child")),
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c("ordered", "factor"))
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expect_identical(class(age_groups(ages, "elderly")),
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c("ordered", "factor"))
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expect_identical(class(age_groups(ages, "tens")),
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c("ordered", "factor"))
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expect_identical(class(age_groups(ages, "fives")),
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c("ordered", "factor"))
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expect_equal(length(age_groups(c(10, 20, 30, NA), na.rm = TRUE)),
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3)
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})
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