mirror of https://github.com/msberends/AMR.git
360 lines
29 KiB
HTML
360 lines
29 KiB
HTML
<!DOCTYPE html>
|
|
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Use these functions to return a specific property of an antiviral drug from the antivirals data set. All input values will be evaluated internally with as.av()."><title>Get Properties of an Antiviral Drug — av_property • AMR (for R)</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.1.3/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.1.3/bootstrap.bundle.min.js"></script><link href="../deps/Fira_Code-0.4.4/font.css" rel="stylesheet"><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.rawgit.com/afeld/bootstrap-toc/v1.0.1/dist/bootstrap-toc.min.js"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><script src="../extra.js"></script><meta property="og:title" content="Get Properties of an Antiviral Drug — av_property"><meta property="og:description" content="Use these functions to return a specific property of an antiviral drug from the antivirals data set. All input values will be evaluated internally with as.av()."><meta property="og:image" content="https://msberends.github.io/AMR/logo.svg"><meta name="twitter:card" content="summary_large_image"><meta name="twitter:creator" content="@msberends"><meta name="twitter:site" content="@msberends"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
|
|
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
|
|
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
|
|
<![endif]--></head><body>
|
|
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
|
|
|
|
|
<nav class="navbar fixed-top navbar-dark navbar-expand-lg bg-primary"><div class="container">
|
|
|
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
|
|
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9053</small>
|
|
|
|
|
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
|
<span class="navbar-toggler-icon"></span>
|
|
</button>
|
|
|
|
<div id="navbar" class="collapse navbar-collapse ms-3">
|
|
<ul class="navbar-nav me-auto"><li class="nav-item">
|
|
<a class="nav-link" href="../index.html">
|
|
<span class="fa fa-home"></span>
|
|
|
|
Home
|
|
</a>
|
|
</li>
|
|
<li class="active nav-item dropdown">
|
|
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown--how-to">
|
|
<span class="fa fa-question-circle"></span>
|
|
|
|
How to
|
|
</a>
|
|
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
|
<a class="dropdown-item" href="../articles/AMR.html">
|
|
<span class="fa fa-directions"></span>
|
|
|
|
Conduct AMR analysis
|
|
</a>
|
|
<a class="dropdown-item" href="../articles/resistance_predict.html">
|
|
<span class="fa fa-dice"></span>
|
|
|
|
Predict antimicrobial resistance
|
|
</a>
|
|
<a class="dropdown-item" href="../articles/datasets.html">
|
|
<span class="fa fa-database"></span>
|
|
|
|
Data sets for download / own use
|
|
</a>
|
|
<a class="dropdown-item" href="../articles/PCA.html">
|
|
<span class="fa fa-compress"></span>
|
|
|
|
Conduct principal component analysis for AMR
|
|
</a>
|
|
<a class="dropdown-item" href="../articles/MDR.html">
|
|
<span class="fa fa-skull-crossbones"></span>
|
|
|
|
Determine multi-drug resistance (MDR)
|
|
</a>
|
|
<a class="dropdown-item" href="../articles/WHONET.html">
|
|
<span class="fa fa-globe-americas"></span>
|
|
|
|
Work with WHONET data
|
|
</a>
|
|
<a class="dropdown-item" href="../articles/SPSS.html">
|
|
<span class="fa fa-file-upload"></span>
|
|
|
|
Import data from SPSS/SAS/Stata
|
|
</a>
|
|
<a class="dropdown-item" href="../articles/EUCAST.html">
|
|
<span class="fa fa-exchange-alt"></span>
|
|
|
|
Apply EUCAST rules
|
|
</a>
|
|
<a class="dropdown-item" href="../reference/mo_property.html">
|
|
<span class="fa fa-bug"></span>
|
|
|
|
Get properties of a microorganism
|
|
</a>
|
|
<a class="dropdown-item" href="../reference/ab_property.html">
|
|
<span class="fa fa-capsules"></span>
|
|
|
|
Get properties of an antibiotic
|
|
</a>
|
|
<a class="dropdown-item" href="../reference/av_property.html">
|
|
<span class="fa fa-capsules"></span>
|
|
|
|
Get properties of an antiviral agent
|
|
</a>
|
|
</div>
|
|
</li>
|
|
<li class="nav-item">
|
|
<a class="nav-link" href="../reference/index.html">
|
|
<span class="fa fa-book-open"></span>
|
|
|
|
Manual
|
|
</a>
|
|
</li>
|
|
<li class="nav-item">
|
|
<a class="nav-link" href="../authors.html">
|
|
<span class="fa fa-users"></span>
|
|
|
|
Authors
|
|
</a>
|
|
</li>
|
|
<li class="nav-item">
|
|
<a class="nav-link" href="../news/index.html">
|
|
<span class="far fa far fa-newspaper"></span>
|
|
|
|
Changelog
|
|
</a>
|
|
</li>
|
|
</ul><form class="form-inline my-2 my-lg-0" role="search">
|
|
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
|
|
|
<ul class="navbar-nav"><li class="nav-item">
|
|
<a class="external-link nav-link" href="https://github.com/msberends/AMR">
|
|
<span class="fab fa fab fa-github"></span>
|
|
|
|
Source Code
|
|
</a>
|
|
</li>
|
|
</ul></div>
|
|
|
|
|
|
</div>
|
|
</nav><div class="container template-reference-topic">
|
|
<div class="row">
|
|
<main id="main" class="col-md-9"><div class="page-header">
|
|
<img src="../logo.svg" class="logo" alt=""><h1>Get Properties of an Antiviral Drug</h1>
|
|
<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/HEAD/R/av_property.R" class="external-link"><code>R/av_property.R</code></a></small>
|
|
<div class="d-none name"><code>av_property.Rd</code></div>
|
|
</div>
|
|
|
|
<div class="ref-description section level2">
|
|
<p>Use these functions to return a specific property of an antiviral drug from the <a href="antibiotics.html">antivirals</a> data set. All input values will be evaluated internally with <code><a href="as.av.html">as.av()</a></code>.</p>
|
|
</div>
|
|
|
|
<div class="section level2">
|
|
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
|
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">av_name</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, tolower <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span></span>
|
|
<span></span>
|
|
<span><span class="fu">av_cid</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span>
|
|
<span></span>
|
|
<span><span class="fu">av_synonyms</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span>
|
|
<span></span>
|
|
<span><span class="fu">av_tradenames</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span>
|
|
<span></span>
|
|
<span><span class="fu">av_group</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span></span>
|
|
<span></span>
|
|
<span><span class="fu">av_atc</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span>
|
|
<span></span>
|
|
<span><span class="fu">av_loinc</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span>
|
|
<span></span>
|
|
<span><span class="fu">av_ddd</span><span class="op">(</span><span class="va">x</span>, administration <span class="op">=</span> <span class="st">"oral"</span>, <span class="va">...</span><span class="op">)</span></span>
|
|
<span></span>
|
|
<span><span class="fu">av_ddd_units</span><span class="op">(</span><span class="va">x</span>, administration <span class="op">=</span> <span class="st">"oral"</span>, <span class="va">...</span><span class="op">)</span></span>
|
|
<span></span>
|
|
<span><span class="fu">av_info</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span></span>
|
|
<span></span>
|
|
<span><span class="fu">av_url</span><span class="op">(</span><span class="va">x</span>, open <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span></span>
|
|
<span></span>
|
|
<span><span class="fu">av_property</span><span class="op">(</span><span class="va">x</span>, property <span class="op">=</span> <span class="st">"name"</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
|
|
</div>
|
|
|
|
<div class="section level2">
|
|
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
|
<dl><dt>x</dt>
|
|
<dd><p>any (vector of) text that can be coerced to a valid antiviral drug code with <code><a href="as.av.html">as.av()</a></code></p></dd>
|
|
|
|
|
|
<dt>language</dt>
|
|
<dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_AMR_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd>
|
|
|
|
|
|
<dt>tolower</dt>
|
|
<dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether the first <a href="https://rdrr.io/r/base/character.html" class="external-link">character</a> of every output should be transformed to a lower case <a href="https://rdrr.io/r/base/character.html" class="external-link">character</a>.</p></dd>
|
|
|
|
|
|
<dt>...</dt>
|
|
<dd><p>other arguments passed on to <code><a href="as.av.html">as.av()</a></code></p></dd>
|
|
|
|
|
|
<dt>administration</dt>
|
|
<dd><p>way of administration, either <code>"oral"</code> or <code>"iv"</code></p></dd>
|
|
|
|
|
|
<dt>open</dt>
|
|
<dd><p>browse the URL using <code><a href="https://rdrr.io/r/utils/browseURL.html" class="external-link">utils::browseURL()</a></code></p></dd>
|
|
|
|
|
|
<dt>property</dt>
|
|
<dd><p>one of the column names of one of the <a href="antibiotics.html">antivirals</a> data set: <code>vector_or(colnames(antivirals), sort = FALSE)</code>.</p></dd>
|
|
|
|
</dl></div>
|
|
<div class="section level2">
|
|
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
|
|
|
|
|
<ul><li><p>An <a href="https://rdrr.io/r/base/integer.html" class="external-link">integer</a> in case of <code>av_cid()</code></p></li>
|
|
<li><p>A named <a href="https://rdrr.io/r/base/list.html" class="external-link">list</a> in case of <code>av_info()</code> and multiple <code>av_atc()</code>/<code>av_synonyms()</code>/<code>av_tradenames()</code></p></li>
|
|
<li><p>A <a href="https://rdrr.io/r/base/double.html" class="external-link">double</a> in case of <code>av_ddd()</code></p></li>
|
|
<li><p>A <a href="https://rdrr.io/r/base/character.html" class="external-link">character</a> in all other cases</p></li>
|
|
</ul></div>
|
|
<div class="section level2">
|
|
<h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2>
|
|
<p>All output <a href="translate.html">will be translated</a> where possible.</p>
|
|
<p>The function <code>av_url()</code> will return the direct URL to the official WHO website. A warning will be returned if the required ATC code is not available.</p>
|
|
</div>
|
|
<div class="section level2">
|
|
<h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2>
|
|
|
|
|
|
<p>World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: <a href="https://www.whocc.no/atc_ddd_index/" class="external-link">https://www.whocc.no/atc_ddd_index/</a></p>
|
|
<p>European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: <a href="https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm" class="external-link">https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm</a></p>
|
|
</div>
|
|
<div class="section level2">
|
|
<h2 id="reference-data-publicly-available">Reference Data Publicly Available<a class="anchor" aria-label="anchor" href="#reference-data-publicly-available"></a></h2>
|
|
|
|
|
|
<p>All data sets in this <code>AMR</code> package (about microorganisms, antibiotics, R/SI interpretation, EUCAST rules, etc.) are publicly and freely available for download in the following formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, SAS, and Stata. We also provide tab-separated plain text files that are machine-readable and suitable for input in any software program, such as laboratory information systems. Please visit <a href="https://msberends.github.io/AMR/articles/datasets.html">our website for the download links</a>. The actual files are of course available on <a href="https://github.com/msberends/AMR/tree/main/data-raw" class="external-link">our GitHub repository</a>.</p>
|
|
</div>
|
|
<div class="section level2">
|
|
<h2 id="see-also">See also<a class="anchor" aria-label="anchor" href="#see-also"></a></h2>
|
|
<div class="dont-index"><p><a href="antibiotics.html">antivirals</a></p></div>
|
|
</div>
|
|
|
|
<div class="section level2">
|
|
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
|
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co"># all properties:</span></span></span>
|
|
<span class="r-in"><span><span class="fu">av_name</span><span class="op">(</span><span class="st">"ACI"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "Aciclovir"</span>
|
|
<span class="r-in"><span><span class="fu">av_atc</span><span class="op">(</span><span class="st">"ACI"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "J05AB01"</span>
|
|
<span class="r-in"><span><span class="fu">av_cid</span><span class="op">(</span><span class="st">"ACI"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] 135398513</span>
|
|
<span class="r-in"><span><span class="fu">av_synonyms</span><span class="op">(</span><span class="st">"ACI"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "acicloftal" "aciclovier" "aciclovirum" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [4] "activir" "acyclofoam" "acycloguanosine" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [7] "acyclovir" "acyclovir lauriad" "avaclyr" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [10] "cargosil" "cyclovir" "genvir" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [13] "gerpevir" "hascovir" "maynar" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [16] "novirus" "poviral" "sitavig" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [19] "sitavir" "vipral" "viropump" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [22] "virorax" "zovirax" "zyclir" </span>
|
|
<span class="r-in"><span><span class="fu">av_tradenames</span><span class="op">(</span><span class="st">"ACI"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "acicloftal" "aciclovier" "aciclovirum" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [4] "activir" "acyclofoam" "acycloguanosine" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [7] "acyclovir" "acyclovir lauriad" "avaclyr" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [10] "cargosil" "cyclovir" "genvir" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [13] "gerpevir" "hascovir" "maynar" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [16] "novirus" "poviral" "sitavig" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [19] "sitavir" "vipral" "viropump" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [22] "virorax" "zovirax" "zyclir" </span>
|
|
<span class="r-in"><span><span class="fu">av_group</span><span class="op">(</span><span class="st">"ACI"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "Nucleosides and nucleotides excl. reverse transcriptase inhibitors"</span>
|
|
<span class="r-in"><span><span class="fu">av_url</span><span class="op">(</span><span class="st">"ACI"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> Aciclovir </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> "https://www.whocc.no/atc_ddd_index/?code=J05AB01&showdescription=no" </span>
|
|
<span class="r-in"><span></span></span>
|
|
<span class="r-in"><span><span class="co"># smart lowercase tranformation</span></span></span>
|
|
<span class="r-in"><span><span class="fu">av_name</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"ACI"</span>, <span class="st">"VALA"</span><span class="op">)</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "Aciclovir" "Valaciclovir"</span>
|
|
<span class="r-in"><span><span class="fu">av_name</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"ACI"</span>, <span class="st">"VALA"</span><span class="op">)</span>, tolower <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "aciclovir" "valaciclovir"</span>
|
|
<span class="r-in"><span></span></span>
|
|
<span class="r-in"><span><span class="co"># defined daily doses (DDD)</span></span></span>
|
|
<span class="r-in"><span><span class="fu">av_ddd</span><span class="op">(</span><span class="st">"ACI"</span>, <span class="st">"oral"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] 4</span>
|
|
<span class="r-in"><span><span class="fu">av_ddd_units</span><span class="op">(</span><span class="st">"ACI"</span>, <span class="st">"oral"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "g"</span>
|
|
<span class="r-in"><span><span class="fu">av_ddd</span><span class="op">(</span><span class="st">"ACI"</span>, <span class="st">"iv"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] 4</span>
|
|
<span class="r-in"><span><span class="fu">av_ddd_units</span><span class="op">(</span><span class="st">"ACI"</span>, <span class="st">"iv"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "g"</span>
|
|
<span class="r-in"><span></span></span>
|
|
<span class="r-in"><span><span class="fu">av_info</span><span class="op">(</span><span class="st">"ACI"</span><span class="op">)</span> <span class="co"># all properties as a list</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $av</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "ACI"</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $cid</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] 135398513</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $name</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "Aciclovir"</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $group</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "Nucleosides and nucleotides excl. reverse transcriptase inhibitors"</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $atc</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "J05AB01"</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $tradenames</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "acicloftal" "aciclovier" "aciclovirum" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [4] "activir" "acyclofoam" "acycloguanosine" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [7] "acyclovir" "acyclovir lauriad" "avaclyr" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [10] "cargosil" "cyclovir" "genvir" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [13] "gerpevir" "hascovir" "maynar" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [16] "novirus" "poviral" "sitavig" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [19] "sitavir" "vipral" "viropump" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [22] "virorax" "zovirax" "zyclir" </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $loinc</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] ""</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $ddd</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $ddd$oral</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $ddd$oral$amount</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] 4</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $ddd$oral$units</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "g"</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $ddd$iv</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $ddd$iv$amount</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] 4</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> $ddd$iv$units</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "g"</span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-out co"><span class="r-pr">#></span> </span>
|
|
<span class="r-in"><span></span></span>
|
|
<span class="r-in"><span><span class="co"># all av_* functions use as.av() internally, so you can go from 'any' to 'any':</span></span></span>
|
|
<span class="r-in"><span><span class="fu">av_atc</span><span class="op">(</span><span class="st">"ACI"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "J05AB01"</span>
|
|
<span class="r-in"><span><span class="fu">av_group</span><span class="op">(</span><span class="st">"J05AB01"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "Nucleosides and nucleotides excl. reverse transcriptase inhibitors"</span>
|
|
<span class="r-in"><span><span class="fu">av_loinc</span><span class="op">(</span><span class="st">"abacavir"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "29113-8" "78772-1" "78773-9" "79134-3" "80118-3"</span>
|
|
<span class="r-in"><span><span class="fu">av_name</span><span class="op">(</span><span class="st">"29113-8"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "Abacavir"</span>
|
|
<span class="r-in"><span><span class="fu">av_name</span><span class="op">(</span><span class="fl">135398513</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "Aciclovir"</span>
|
|
<span class="r-in"><span><span class="fu">av_name</span><span class="op">(</span><span class="st">"J05AB01"</span><span class="op">)</span></span></span>
|
|
<span class="r-out co"><span class="r-pr">#></span> [1] "Aciclovir"</span>
|
|
</code></pre></div>
|
|
</div>
|
|
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
|
</nav></aside></div>
|
|
|
|
|
|
<footer><div class="pkgdown-footer-left">
|
|
<p></p><p><code>AMR</code> (for R). Developed at the <a target="_blank" href="https://www.rug.nl" class="external-link">University of Groningen</a> in collaboration with non-profit organisations<br><a target="_blank" href="https://www.certe.nl" class="external-link">Certe Medical Diagnostics and Advice Foundation</a> and <a target="_blank" href="https://www.umcg.nl" class="external-link">University Medical Center Groningen</a>.</p>
|
|
</div>
|
|
|
|
<div class="pkgdown-footer-right">
|
|
<p></p><p><a target="_blank" href="https://www.rug.nl" class="external-link"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/logos/logo_rug.svg" style="max-width: 150px;"></a></p>
|
|
</div>
|
|
|
|
</footer></div>
|
|
|
|
|
|
|
|
|
|
|
|
</body></html>
|
|
|