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AMR/data-raw
History
dr. M.S. (Matthijs) Berends 08d387b5ce (v1.8.0.9005) as.rsi() fix
2022-03-10 19:33:25 +01:00
..
_install_deps.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
_internals.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
ab.md5
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
AMR_intro.ai
(v1.7.1.9068) new logo, unit tests
2021-12-12 11:07:02 +01:00
AMR_latest.tar.gz
(v1.8.0.9005) as.rsi() fix
2022-03-10 19:33:25 +01:00
antibiotics.dta
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
antibiotics.rds
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
antibiotics.sas
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
antibiotics.sav
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
antibiotics.txt
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
antibiotics.xlsx
(v1.7.1.9007) Updated antibiotics dataset, fixes #41
2021-06-23 10:03:17 +02:00
antivirals.dta
(v1.3.0.9017) small fix
2020-09-12 13:54:21 +02:00
antivirals.rds
(v1.3.0.9012) data sets vignette update
2020-08-29 21:41:46 +02:00
antivirals.sas
(v1.3.0.9017) small fix
2020-09-12 13:54:21 +02:00
antivirals.sav
(v1.3.0.9017) small fix
2020-09-12 13:54:21 +02:00
antivirals.txt
(v1.3.0.9012) data sets vignette update
2020-08-29 21:41:46 +02:00
antivirals.xlsx
(v1.3.0.9017) small fix
2020-09-12 13:54:21 +02:00
av.md5
(v1.3.0.9018) language corrections
2020-09-14 12:21:23 +02:00
create_survey_page.R
(v1.2.0.9037) survey on website
2020-07-28 18:39:57 +02:00
data_dsmz.rds
(v1.1.0.9020) updated taxonomy
2020-05-27 16:37:49 +02:00
dosage.dta
(v1.5.0.9011) small dosage update
2021-01-24 23:27:11 +01:00
dosage.md5
(v1.5.0.9011) small dosage update
2021-01-24 23:27:11 +01:00
dosage.rds
(v1.5.0.9011) small dosage update
2021-01-24 23:27:11 +01:00
dosage.sas
(v1.5.0.9011) small dosage update
2021-01-24 23:27:11 +01:00
dosage.sav
(v1.5.0.9011) small dosage update
2021-01-24 23:27:11 +01:00
dosage.txt
(v1.5.0.9011) small dosage update
2021-01-24 23:27:11 +01:00
dosage.xlsx
(v1.5.0.9011) small dosage update
2021-01-24 23:27:11 +01:00
Dosages_v_11.0_Breakpoint_Tables.xlsx
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
2021-01-12 22:08:04 +01:00
download_buttons.psd
(v1.3.0.9012) data sets vignette update
2020-08-29 21:41:46 +02:00
download_dta.png
(v1.3.0.9012) data sets vignette update
2020-08-29 21:41:46 +02:00
download_r.png
(v1.3.0.9012) data sets vignette update
2020-08-29 21:41:46 +02:00
download_sas.png
(v1.3.0.9012) data sets vignette update
2020-08-29 21:41:46 +02:00
download_sav.png
(v1.3.0.9012) data sets vignette update
2020-08-29 21:41:46 +02:00
download_txt.png
(v1.3.0.9012) data sets vignette update
2020-08-29 21:41:46 +02:00
download_xlsx.png
(v1.3.0.9012) data sets vignette update
2020-08-29 21:41:46 +02:00
eucast_rules.tsv
(v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers
2021-11-29 10:38:38 +01:00
ex2.R
(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup
2021-11-28 23:01:26 +01:00
ex2.rds
(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup
2021-11-28 23:01:26 +01:00
example_isolates.rds
(v1.7.1.9016) only_treatable ab selectors
2021-07-08 22:23:28 +02:00
exploratory_data_analysis_test.R
(v1.7.1.9002) ab class selectors update
2021-06-14 22:04:04 +02:00
github_preview.png
(v1.2.0.9026) move to github
2020-07-08 14:48:06 +02:00
github_preview.psd
(v1.2.0.9026) move to github
2020-07-08 14:48:06 +02:00
Intrinsic_Resistance_and_Unusual_Phenotypes_Tables_v3.3_20211018.pdf
(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup
2021-11-28 23:01:26 +01:00
intrinsic_resistant.dta
(v1.7.1.9073) as.rsi() fix for UTIs
2021-12-14 21:47:14 +01:00
intrinsic_resistant.md5
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
2021-12-11 13:41:31 +01:00
intrinsic_resistant.rds
(v1.7.1.9073) as.rsi() fix for UTIs
2021-12-14 21:47:14 +01:00
intrinsic_resistant.sas
(v1.7.1.9073) as.rsi() fix for UTIs
2021-12-14 21:47:14 +01:00
intrinsic_resistant.sav
(v1.7.1.9073) as.rsi() fix for UTIs
2021-12-14 21:47:14 +01:00
intrinsic_resistant.txt
(v1.7.1.9073) as.rsi() fix for UTIs
2021-12-14 21:47:14 +01:00
intrinsic_resistant.xlsx
(v1.5.0.9028) Updated taxonomy until March 2021
2021-03-04 23:28:32 +01:00
intrinsicR.md5
(v1.7.1.9073) as.rsi() fix for UTIs
2021-12-14 21:47:14 +01:00
logo.svg
(v1.7.1.9068) new logo, unit tests
2021-12-12 11:07:02 +01:00
Loinc.csv
(v0.9.0.9012) Support for LOINC codes
2020-01-26 20:20:00 +01:00
loinc.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
microorganisms.dta
(v1.7.1.9056) unit tests
2021-11-29 11:55:18 +01:00
microorganisms.old.dta
(v1.7.1.9051) updated taxonomy, updated git branch name
2021-10-06 13:23:57 +02:00
microorganisms.old.md5
(v1.7.1.9051) updated taxonomy, updated git branch name
2021-10-06 13:23:57 +02:00
microorganisms.old.rds
(v1.7.1.9051) updated taxonomy, updated git branch name
2021-10-06 13:23:57 +02:00
microorganisms.old.sas
(v1.7.1.9051) updated taxonomy, updated git branch name
2021-10-06 13:23:57 +02:00
microorganisms.old.sav
(v1.7.1.9051) updated taxonomy, updated git branch name
2021-10-06 13:23:57 +02:00
microorganisms.old.txt
(v1.7.1.9051) updated taxonomy, updated git branch name
2021-10-06 13:23:57 +02:00
microorganisms.old.xlsx
(v1.5.0.9028) Updated taxonomy until March 2021
2021-03-04 23:28:32 +01:00
microorganisms.rds
(v1.7.1.9056) unit tests
2021-11-29 11:55:18 +01:00
microorganisms.sas
(v1.7.1.9056) unit tests
2021-11-29 11:55:18 +01:00
microorganisms.sav
(v1.7.1.9056) unit tests
2021-11-29 11:55:18 +01:00
microorganisms.translation.rds
(v1.5.0.9030) as.ab() speed improvement
2021-03-05 10:32:09 +01:00
microorganisms.txt
(v1.7.1.9056) unit tests
2021-11-29 11:55:18 +01:00
microorganisms.xlsx
(v1.5.0.9041) SNOMED update
2021-03-11 21:42:30 +01:00
mo.md5
(v1.7.1.9056) unit tests
2021-11-29 11:55:18 +01:00
poorman_prepend.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
read_EUCAST.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
reproduction_of_antibiotics.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
reproduction_of_antivirals.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
reproduction_of_dosage.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
reproduction_of_example_isolates_unclean.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
reproduction_of_intrinsic_resistant.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
reproduction_of_microorganisms_update.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
reproduction_of_microorganisms.R
(v1.8.0.9001) as.mo improvement, fixes #52
2022-02-26 21:58:23 +01:00
reproduction_of_poorman.R
(v1.7.1.9060) bugfix set_ab_names
2021-12-05 23:11:10 +01:00
reproduction_of_rsi_translation.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
rsi_translation.dta
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
2021-12-14 22:39:23 +01:00
rsi_translation.rds
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
2021-12-14 22:39:23 +01:00
rsi_translation.sas
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
2021-12-14 22:39:23 +01:00
rsi_translation.sav
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
2021-12-14 22:39:23 +01:00
rsi_translation.txt
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
2021-12-14 22:39:23 +01:00
rsi_translation.xlsx
(v1.7.0.9002) old MO codes
2021-06-01 16:36:33 +02:00
rsi.md5
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
2021-12-14 22:39:23 +01:00
SNOMED_PHVS_Microorganism_CDC_V12.txt
(v1.5.0.9041) SNOMED update
2021-03-11 21:42:30 +01:00
snomed.R
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
tinytest_1.2.4.10.tar.gz
(v1.6.0.9063) prepare new release
2021-05-24 09:00:11 +02:00
tinytest_1.3.1.tar.gz
(v1.7.1.9033) dplyr grouping fix on windows?
2021-08-30 15:01:32 +02:00
translations.tsv
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
v_10.0_Breakpoint_Tables.xlsx
(v0.9.0.9022) inheritance fix
2020-02-10 14:18:15 +01:00
v_11.0_Breakpoint_Tables.xlsx
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
2021-01-12 22:08:04 +01:00
whonet_bugfixes.R
(v1.7.1.9050) fix for as.mo
2021-10-05 14:00:35 +02:00