mirror of
https://github.com/msberends/AMR.git
synced 2024-12-27 06:06:12 +01:00
40 lines
1.7 KiB
R
40 lines
1.7 KiB
R
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/catalogue_of_life.R
|
|
\name{catalogue_of_life_version}
|
|
\alias{catalogue_of_life_version}
|
|
\title{Version info of included Catalogue of Life}
|
|
\usage{
|
|
catalogue_of_life_version()
|
|
}
|
|
\value{
|
|
a \code{list}, which prints in pretty format
|
|
}
|
|
\description{
|
|
This function returns information about the included data from the Catalogue of Life.
|
|
}
|
|
\details{
|
|
For DSMZ, see \code{?microorganisms}.
|
|
}
|
|
\section{Catalogue of Life}{
|
|
|
|
\if{html}{\figure{logo_col.png}{options: height=40px style=margin-bottom:5px} \cr}
|
|
This package contains the complete taxonomic tree of almost all microorganisms (~70,000 species) from the authoritative and comprehensive Catalogue of Life (\url{http://www.catalogueoflife.org}). The Catalogue of Life is the most comprehensive and authoritative global index of species currently available.
|
|
|
|
\link[=catalogue_of_life]{Click here} for more information about the included taxa. Check which version of the Catalogue of Life was included in this package with \code{\link{catalogue_of_life_version}()}.
|
|
}
|
|
|
|
\section{Read more on our website!}{
|
|
|
|
On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a tutorial} about how to conduct AMR analysis, the \href{https://msberends.gitlab.io/AMR/reference}{complete documentation of all functions} (which reads a lot easier than here in R) and \href{https://msberends.gitlab.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
|
|
}
|
|
|
|
\examples{
|
|
library(dplyr)
|
|
library(clean)
|
|
microorganisms \%>\% freq(kingdom)
|
|
microorganisms \%>\% group_by(kingdom) \%>\% freq(phylum, nmax = NULL)
|
|
}
|
|
\seealso{
|
|
\code{\link{microorganisms}}
|
|
}
|