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Code Releases Activity
91415462c0
AMR/R
History
dr. M.S. (Matthijs) Berends 8907e8e4af (v2.1.1.9083) update for first_isolate()
2024-09-30 19:13:53 +02:00
..
aa_amr-package.R
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
aa_globals.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
aa_helper_functions.R
(v2.1.1.9082) algorithm updates
2024-09-30 18:46:55 +02:00
aa_helper_pm_functions.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
aa_options.R
(v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA
2024-09-22 11:45:51 +02:00
ab_from_text.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
ab_property.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
ab_selectors.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
ab.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
age.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
antibiogram.R
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
atc_online.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
av_from_text.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
av_property.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
av.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
availability.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
bug_drug_combinations.R
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
count.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
custom_antimicrobials.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
custom_eucast_rules.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
custom_microorganisms.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
data.R
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
disk.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
eucast_rules.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
export_biosample.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
first_isolate.R
(v2.1.1.9083) update for first_isolate()
2024-09-30 19:13:53 +02:00
g.test.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
get_episode.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
ggplot_pca.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
ggplot_sir.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
guess_ab_col.R
(v2.1.1.9071) update veterinary SIR interpretation, add only_fungi
2024-09-19 11:44:56 +02:00
italicise_taxonomy.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
join_microorganisms.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
key_antimicrobials.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
kurtosis.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
like.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
mdro.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
mean_amr_distance.R
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
mic.R
(v2.1.1.9080) fix rescale_mic() for an outside MIC range
2024-09-24 22:39:40 +02:00
mo_matching_score.R
(v2.1.1.9082) algorithm updates
2024-09-30 18:46:55 +02:00
mo_property.R
(v2.1.1.9082) algorithm updates
2024-09-30 18:46:55 +02:00
mo_source.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
mo.R
(v2.1.1.9082) algorithm updates
2024-09-30 18:46:55 +02:00
pca.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
plotting.R
(v2.1.1.9080) fix rescale_mic() for an outside MIC range
2024-09-24 22:39:40 +02:00
proportion.R
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
random.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
resistance_predict.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
sir_calc.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
sir_df.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
sir.R
(v2.1.1.9080) fix rescale_mic() for an outside MIC range
2024-09-24 22:39:40 +02:00
skewness.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
sysdata.rda
(v2.1.1.9082) algorithm updates
2024-09-30 18:46:55 +02:00
translate.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
vctrs.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
whocc.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
zz_deprecated.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
zzz.R
(v2.1.1.9073) unit tests
2024-09-19 13:57:36 +02:00