mirror of https://github.com/msberends/AMR.git
51 lines
1.8 KiB
R
51 lines
1.8 KiB
R
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/join.R
|
|
\name{join}
|
|
\alias{join}
|
|
\alias{inner_join_bactlist}
|
|
\alias{inner_join}
|
|
\alias{left_join_bactlist}
|
|
\alias{right_join_bactlist}
|
|
\alias{full_join_bactlist}
|
|
\alias{semi_join_bactlist}
|
|
\alias{anti_join_bactlist}
|
|
\title{Join a table with \code{bactlist}}
|
|
\usage{
|
|
inner_join_bactlist(x, by = "bactid", ...)
|
|
|
|
left_join_bactlist(x, by = "bacteriecode", ...)
|
|
|
|
right_join_bactlist(x, by = "bacteriecode", ...)
|
|
|
|
full_join_bactlist(x, by = "bacteriecode", ...)
|
|
|
|
semi_join_bactlist(x, by = "bacteriecode", ...)
|
|
|
|
anti_join_bactlist(x, by = "bacteriecode", ...)
|
|
}
|
|
\arguments{
|
|
\item{x}{existing table to join}
|
|
|
|
\item{by}{a variable to join by - could be a column name of \code{x} with values that exist in \code{bactlist$bactid} (like \code{by = "bacteria_id"}), or another column in \code{\link{bactlist}} (but then it should be named, like \code{by = c("my_genus_species" = "fullname")})}
|
|
|
|
\item{...}{other parameters to pass trhough to \code{dplyr::\link[dplyr]{join}}.}
|
|
}
|
|
\description{
|
|
Join the list of microorganisms \code{\link{bactlist}} easily to an existing table.
|
|
}
|
|
\details{
|
|
As opposed to the \code{\link[dplyr]{join}} functions of \code{dplyr}, at default existing columns will get a suffix \code{"2"} and the newly joined columns will not get a suffix. See \code{\link[dplyr]{join}} for more information.
|
|
}
|
|
\examples{
|
|
df <- data.frame(date = seq(from = as.Date("2018-01-01"),
|
|
to = as.Date("2018-01-07"),
|
|
by = 1),
|
|
bacteria_id = c("STAAUR", "STAAUR", "STAAUR", "STAAUR",
|
|
"ESCCOL", "ESCCOL", "ESCCOL"),
|
|
stringsAsFactors = FALSE)
|
|
|
|
colnames(df)
|
|
df2 <- left_join_bactlist(df, "bacteria_id")
|
|
colnames(df2)
|
|
}
|