AMR/.github/workflows/website.yaml

80 lines
3.4 KiB
YAML

# ==================================================================== #
# TITLE #
# AMR: An R Package for Working with Antimicrobial Resistance Data #
# #
# SOURCE #
# https://github.com/msberends/AMR #
# #
# CITE AS #
# Berends MS, Luz CF, Friedrich AW, Sinha BNM, Albers CJ, Glasner C #
# (2022). AMR: An R Package for Working with Antimicrobial Resistance #
# Data. Journal of Statistical Software, 104(3), 1-31. #
# https://doi.org/10.18637/jss.v104.i03 #
# #
# Developed at the University of Groningen and the University Medical #
# Center Groningen in The Netherlands, in collaboration with many #
# colleagues from around the world, see our website. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
# Create a website from the R documentation using pkgdown
# Git commit and push to the 'gh-pages' branch
on:
push:
# only on main
branches: 'main'
name: Update website
jobs:
update-website:
runs-on: ubuntu-latest
continue-on-error: true
steps:
- uses: actions/checkout@v3
with:
# this is to keep timestamps, the default fetch-depth: 1 gets the timestamps of the moment of cloning
fetch-depth: 0
- name: Preserve timestamps
run: |
sudo apt install git-restore-mtime
git restore-mtime
- uses: r-lib/actions/setup-pandoc@v2
- name: Set up R
uses: r-lib/actions/setup-r@v2
with:
r-version: "release"
# use RStudio Package Manager (RSPM) to quickly install packages
use-public-rspm: true
- name: Set up R dependencies
uses: r-lib/actions/setup-r-dependencies@v2
with:
# add extra packages for website articles:
extra-packages: |
any::pkgdown
any::tidymodels
any::data.table
# Send updates to repo using GH Actions bot
- name: Create website in separate branch
run: |
git config user.name "github-actions"
git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE, clean = TRUE, install = TRUE, branch = "gh-pages")'