mirror of https://github.com/msberends/AMR.git
47 lines
2.5 KiB
R
47 lines
2.5 KiB
R
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Data Analysis for R #
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# #
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# SOURCE #
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# https://github.com/msberends/AMR #
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# #
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# LICENCE #
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# (c) 2018-2021 Berends MS, Luz CF et al. #
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# Developed at the University of Groningen, the Netherlands, in #
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# collaboration with non-profit organisations Certe Medical #
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# Diagnostics & Advice, and University Medical Center Groningen. #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# #
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# Visit our website for the full manual and a complete tutorial about #
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# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
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# ==================================================================== #
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# test only on GitHub Actions and at home - not on CRAN as tests are lengthy
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if (identical(Sys.getenv("R_RUN_TINYTEST"), "true")) {
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# env var 'R_LIBS_USER' got overwritten during 'R CMD check' in GitHub Actions, so:
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.libPaths(c(Sys.getenv("R_LIBS_USER_GH_ACTIONS"), .libPaths()))
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if (AMR:::pkg_is_available("tinytest")) {
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library(AMR)
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out <- test_package("AMR",
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testdir = ifelse(AMR:::dir.exists("inst/tinytest"),
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"inst/tinytest",
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"tinytest"),
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verbose = 99,
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pattern = "first.*\\.[rR]$",
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color = FALSE)
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cat("SUMMARY:\n")
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print(summary(out))
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cat("WARNINGS:\n")
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print(warnings())
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cat(attributes(out)$duration, "\n")
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}
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}
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