mirror of
https://github.com/msberends/AMR.git
synced 2024-12-27 07:26:11 +01:00
37 lines
1.7 KiB
R
37 lines
1.7 KiB
R
context("data.R")
|
|
|
|
test_that("data sets are valid", {
|
|
# IDs should always be unique
|
|
expect_identical(nrow(antibiotics), length(unique(antibiotics$atc)))
|
|
expect_identical(nrow(microorganisms), length(unique(microorganisms$mo)))
|
|
|
|
# there should be no diacritics (i.e. non ASCII) characters in the datasets
|
|
library(dplyr)
|
|
# check only character variables:
|
|
test_microorganisms <- microorganisms %>% select_if(is.character) %>% as.data.frame(stringsAsFactors = FALSE)
|
|
test_microorganisms.old <- microorganisms.old %>% select_if(is.character) %>% as.data.frame(stringsAsFactors = FALSE)
|
|
test_antibiotics <- antibiotics %>% select_if(is.character) %>% as.data.frame(stringsAsFactors = FALSE)
|
|
test_septic_patients <- septic_patients %>% select_if(is.character) %>% as.data.frame(stringsAsFactors = FALSE)
|
|
# and compare them with their transformed version:
|
|
expect_identical(test_microorganisms,
|
|
test_microorganisms %>%
|
|
lapply(iconv, from = "UTF-8", to = "ASCII//TRANSLIT") %>%
|
|
as.data.frame(stringsAsFactors = FALSE))
|
|
|
|
expect_identical(test_microorganisms.old,
|
|
test_microorganisms.old %>%
|
|
lapply(iconv, from = "UTF-8", to = "ASCII//TRANSLIT") %>%
|
|
as.data.frame(stringsAsFactors = FALSE))
|
|
|
|
expect_identical(test_antibiotics,
|
|
test_antibiotics %>%
|
|
lapply(iconv, from = "UTF-8", to = "ASCII//TRANSLIT") %>%
|
|
as.data.frame(stringsAsFactors = FALSE))
|
|
|
|
expect_identical(test_septic_patients,
|
|
test_septic_patients %>%
|
|
lapply(iconv, from = "UTF-8", to = "ASCII//TRANSLIT") %>%
|
|
as.data.frame(stringsAsFactors = FALSE))
|
|
|
|
})
|