1
0
mirror of https://github.com/msberends/AMR.git synced 2025-08-12 18:15:19 +02:00
Files
.github
R
data
data-raw
_reproduction_scripts
datasets
antimicrobials.dta
antimicrobials.feather
antimicrobials.parquet
antimicrobials.rds
antimicrobials.sav
antimicrobials.txt
antimicrobials.xlsx
antivirals.dta
antivirals.feather
antivirals.parquet
antivirals.rds
antivirals.sav
antivirals.txt
antivirals.xlsx
clinical_breakpoints.dta
clinical_breakpoints.feather
clinical_breakpoints.parquet
clinical_breakpoints.rds
clinical_breakpoints.sav
clinical_breakpoints.txt
clinical_breakpoints.xlsx
dosage.dta
dosage.feather
dosage.parquet
dosage.rds
dosage.sav
dosage.txt
dosage.xlsx
intrinsic_resistant.dta
intrinsic_resistant.feather
intrinsic_resistant.parquet
intrinsic_resistant.rds
intrinsic_resistant.sav
intrinsic_resistant.txt
intrinsic_resistant.xlsx
microorganisms.codes.dta
microorganisms.codes.feather
microorganisms.codes.parquet
microorganisms.codes.rds
microorganisms.codes.sav
microorganisms.codes.txt
microorganisms.codes.xlsx
microorganisms.dta
microorganisms.feather
microorganisms.groups.dta
microorganisms.groups.feather
microorganisms.groups.parquet
microorganisms.groups.rds
microorganisms.groups.sav
microorganisms.groups.txt
microorganisms.groups.xlsx
microorganisms.parquet
microorganisms.rds
microorganisms.sav
microorganisms.txt
microorganisms.xlsx
AMR intro.jpg
AMR new logo.txt
AMR_intro.ai
AMR_vet.html
AMR_vet.qmd
AMRforRGPT.pdf
AMRforRGPT.pptx
AMRforRGPT.svg
AMRforRGPT_python.pdf
AMRforRGPT_python.pptx
AMRforRGPT_python.svg
Dosages_v_11.0_Breakpoint_Tables.xlsx
Dosages_v_12.0_Breakpoint_Tables.pdf
Dosages_v_12.0_Breakpoint_Tables.xlsx
Dosages_v_13.0_Breakpoint_Tables.pdf
Dosages_v_13.0_Breakpoint_Tables.xlsx
Expected_Resistant_Phenotypes_v1.2_20230113.pdf
Intrinsic_Resistance_and_Unusual_Phenotypes_Tables_v3.3_20211018.pdf
Loinc.csv
Preference animal species groups.xlsx
SNOMED_PHVS_Microorganism_CDC_V12.txt
Species groups.xlsx
_generate_GPT_knowledge_input.sh
_generate_python_wrapper.sh
_language_update.R
_pre_commit_checks.R
ab.md5
av.md5
bacdive.csv
bartlett_et_al_2022_human_pathogens.xlsx
clin_break.md5
create_survey_page.R
dosage.md5
eucast_rules.tsv
extractATCs.R
intrinsicR.md5
intrinsic_resistant.md5
logo.old.svg
logo.svg
loinc.R
microorganisms.codes.md5
microorganisms.groups.md5
microorganisms.md5
mo.md5
organisms.rds
poorman_prepend.R
read_EUCAST.R
salmonellae.R
salmonellae.rds
salonella_fix.R
species groups.R
taxonomy0.rds
taxonomy1.rds
taxonomy1b.rds
taxonomy1c.rds
taxonomy2.rds
taxonomy2b.rds
taxonomy2c.rds
taxonomy3.rds
taxonomy3b.rds
taxonomy_gbif.rds
taxonomy_lpsn.rds
taxonomy_lpsn_missing.rds
taxonomy_mycobank.rds
toxoplasma.R
translations.tsv
v_10.0_Breakpoint_Tables.xlsx
v_11.0_Breakpoint_Tables.xlsx
v_12.0_Breakpoint_Tables.xlsx
v_13.0_Breakpoint_Tables.xlsx
v_13.1_Breakpoint_Tables.xlsx
v_14.0_Breakpoint_Tables.xlsx
v_15.0_Breakpoint_Tables.xlsx
whonet_bugfixes.R
wisca.xlsx
wisca_params.xlsx
inst
man
pkgdown
tests
vignettes
.Rbuildignore
.gitignore
AMR.Rproj
CRAN-SUBMISSION
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
README.md
_pkgdown.yml
codecov.yml
cran-comments.md
index.md
logo.svg
AMR/data-raw/datasets/microorganisms.codes.feather