mirror of
https://github.com/msberends/AMR.git
synced 2024-12-26 08:06:12 +01:00
43 lines
2.0 KiB
R
Executable File
43 lines
2.0 KiB
R
Executable File
# ==================================================================== #
|
|
# TITLE #
|
|
# Antimicrobial Resistance (AMR) Analysis #
|
|
# #
|
|
# SOURCE #
|
|
# https://gitlab.com/msberends/AMR #
|
|
# #
|
|
# LICENCE #
|
|
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
|
|
# #
|
|
# This R package is free software; you can freely use and distribute #
|
|
# it for both personal and commercial purposes under the terms of the #
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
|
# the Free Software Foundation. #
|
|
# #
|
|
# This R package was created for academic research and was publicly #
|
|
# released in the hope that it will be useful, but it comes WITHOUT #
|
|
# ANY WARRANTY OR LIABILITY. #
|
|
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
|
|
# ==================================================================== #
|
|
|
|
#' Symbol of a p value
|
|
#'
|
|
#' Return the symbol related to the p value: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1. Values above \code{p = 1} will return \code{NA}.
|
|
#' @param p p value
|
|
#' @param emptychar text to show when \code{p > 0.1}
|
|
#' @return Text
|
|
#' @inheritSection AMR Read more on our website!
|
|
#' @export
|
|
p_symbol <- function(p, emptychar = " ") {
|
|
|
|
p <- as.double(p)
|
|
s <- rep(NA_character_, length(p))
|
|
|
|
s[p <= 1] <- emptychar
|
|
s[p <= 0.100] <- "."
|
|
s[p <= 0.050] <- "*"
|
|
s[p <= 0.010] <- "**"
|
|
s[p <= 0.001] <- "***"
|
|
|
|
s
|
|
}
|