AMR/pkgdown/extra.js

125 lines
6.8 KiB
JavaScript

/*
# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Data Analysis for R #
# #
# SOURCE #
# https://github.com/msberends/AMR #
# #
# LICENCE #
# (c) 2018-2021 Berends MS, Luz CF et al. #
# Developed at the University of Groningen, the Netherlands, in #
# collaboration with non-profit organisations Certe Medical #
# Diagnostics & Advice, and University Medical Center Groningen. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
*/
// Add updated Font Awesome 5.8.2 library
$('head').append('<!-- Updated Font Awesome library --><link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.8.2/css/all.css">');
$(document).ready(function() {
// remove version label from header
$(".version.label").remove();
// redirect GitLab to GitHub
var url_old = window.location.href;
var url_new = url_old.replace("gitlab", "github");
if (url_old != url_new) {
window.location.replace(url_new);
}
// Edit title of manual
$('.template-reference-index h1').text('Manual');
// replace 'Value' in manual with 'Returned value'
$(".template-reference-topic h2#value").text("Returned value");
// replace \donttest and \dontrun texts in Examples
if ($(".ref-examples pre").length > 0) {
$(".ref-examples pre").html($(".ref-examples pre").html().replaceAll("# \\donttest{", ""));
$(".ref-examples pre").html($(".ref-examples pre").html().replaceAll("# \\dontrun{", ""));
$(".ref-examples pre").html($(".ref-examples pre").html().replaceAll("# }", ""));
}
// remove leading newline in code examples on changelog
if ($("body .template-news").length > 0) {
$("body .template-news").html($("body .template-news").html().replaceAll('sourceCode R">\n<span', 'sourceCode R"><span'));
}
// change H1 header on dev version on changelog, since pkgdown uses the version number from the installed version
// (rather then using the DESCRIPTION file)
$("h1[id^=unreleased]").text("Current development version");
// PR for 'R for Data Science' on How To pages
if ($(".template-article").length > 0) {
$('#pkgdown-sidebar').prepend(
'<div id="r4ds">' +
' <div class="txt">' +
' <p>' +
' Learn R reading this great book: <i>R for Data Science</i>.' +
' <br><br>' +
' <a target="_blank" href="https://r4ds.had.co.nz/">' +
' Click to read it online - it was published for free.' +
' </a>' +
' </p>' +
' </div>' +
' <div class="img">' +
' <a target="_blank" href="https://r4ds.had.co.nz/">' +
' <img src="https://github.com/msberends/AMR/raw/master/docs/cover_r4ds.png">' +
' </a>' +
' </div>' +
'</div>');
}
// edit footer
$('footer').html(
'<div>' +
'<p><code>AMR</code> (for R). Developed at the <a href="https://www.rug.nl">University of Groningen</a> in collaboration with non-profit organisations <a href="https://www.certe.nl">Certe Medical Diagnostics and Advice Foundation</a> and <a href="https://www.umcg.nl">University Medical Center Groningen</a>.</p>' +
'<a href="https://www.rug.nl"><img src="https://github.com/msberends/AMR/raw/master/docs/logo_rug.png" class="footer_logo"></a>' +
'</div>');
// all links should open in new tab/window
$('footer').html($('footer').html().replace(/href/g, 'target="_blank" href'));
// doctoral titles of authors
function doct_tit(x) {
if (typeof(x) != "undefined") {
// authors
x = x.replace(/Author, maintainer/g, "Main developer");
x = x.replace(/Author, contributor/g, "Main contributor");
x = x.replace(/Author, thesis advisor/g, "Doctoral advisor");
x = x.replace("Alex", "Prof. Dr. Alex");
x = x.replace("Bhanu", "Prof. Dr. Bhanu");
x = x.replace("Casper", "Prof. Dr. Casper");
x = x.replace("Corinna", "Dr. Corinna");
// others
x = x.replace("Bart", "Dr. Bart");
x = x.replace("Sofia", "Dr. Sofia");
x = x.replace("Dennis", "Dr. Dennis");
x = x.replace("Judith", "Dr. Judith");
x = x.replace("Gwen", "Dr. Gwen");
x = x.replace("Anthony", "Dr. Anthony");
x = x.replace("Rogier", "Dr. Rogier");
}
return(x);
}
$(".template-authors").html(doct_tit($(".template-authors").html()));
$(".template-citation-authors").html(doct_tit($(".template-citation-authors").html()));
$('.template-citation-authors h1').eq(0).html("How to cite the <code>AMR</code> package");
$('.template-citation-authors h1').eq(1).html("All contributors of the <code>AMR</code> package");
$(".developers").html(doct_tit($(".developers").html()));
$(".developers a[href='authors.html']").text("All contributors...");
});
$('head').append("<!-- Global site tag (gtag.js) - Google Analytics --> <script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-172114740-1\"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'UA-172114740-1'); </script><!-- Matomo --><script type='text/javascript'> var _paq = _paq || []; /* tracker methods like 'setCustomDimension' should be called before 'trackPageView' */ _paq.push(['setDomains', ['*.msberends.github.io/AMR']]); _paq.push(['enableCrossDomainLinking']); _paq.push(['trackPageView']); _paq.push(['enableLinkTracking']); (function() { var u='https://analyse.uscloud.nl/'; _paq.push(['setTrackerUrl', u+'piwik.php']); _paq.push(['setSiteId', '3']); var d=document, g=d.createElement('script'), s=d.getElementsByTagName('script')[0]; g.type='text/javascript'; g.async=true; g.defer=true; g.src=u+'piwik.js'; s.parentNode.insertBefore(g,s); })();</script><!-- End Matomo Code -->");