mirror of
https://github.com/msberends/AMR.git
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110 lines
6.3 KiB
R
110 lines
6.3 KiB
R
# get complete filenames of all R files in the GitHub repository of nathaneastwood/poorman
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library(magrittr)
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`%like%` <- function(x, y) grepl(y, x, ignore.case = TRUE, perl = TRUE)
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`%unlike%` <- function(x, y) !grepl(y, x, ignore.case = TRUE, perl = TRUE)
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commit <- "3cc0a9920b1eb559dd166f548561244189586b3a"
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files <- xml2::read_html(paste0("https://github.com/nathaneastwood/poorman/tree/", commit, "/R")) %>%
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rvest::html_nodes("a") %>%
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rvest::html_attr("href")
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files <- files[files %like% "/blob/.*R$"]
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# get full URLs of all raw R files
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files <- sort(paste0("https://raw.githubusercontent.com", gsub("blob/", "", files[files %like% "/R/.*.R$"])))
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# remove files with only pkg specific code
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files <- files[files %unlike% "(zzz|init)[.]R$"]
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# also, there's a lot of functions we don't use
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files <- files[files %unlike% "/(between|coalesce|cumulative|fill|glimpse|group_cols|na_if|near|nest_by|check_filter|poorman-package|print|recode|reconstruct|replace_na|replace_with|rownames|slice|union_all|unite|window_rank|with_groups)[.]R$"]
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# add our prepend file, containing info about the source of the data
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intro <- readLines("data-raw/poorman_prepend.R") %>%
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# add commit to intro part
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gsub("{commit}", commit, ., fixed = TRUE) %>%
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# add date to intro part
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gsub("{date}", trimws(format(Sys.Date(), "%e %B %Y")), ., fixed = TRUE)
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# copyright info:
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copyright <- paste0("# ", readLines(paste0("https://raw.githubusercontent.com/nathaneastwood/poorman/", commit, "/LICENSE")))
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# read all contents to a character vector
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contents <- character(0)
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sapply(files, function(file) {
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message("reading ", basename(file))
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contents <<- c(contents, readLines(file))
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invisible()
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})
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# remove lines starting with "#'" and NULL and write to file
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contents <- contents[!grepl("^(#'|NULL|\"_PACKAGE)", contents)]
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contents.bak <- contents
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# grouped attributes same as dplyr
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contents <- gsub("grouped_data", "grouped_df", contents, fixed = TRUE)
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# now make it independent on UseMethod, since we will not export these functions
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has_usemethods <- gsub("^([a-z_]+).*", "\\1", contents[which(contents %like% "usemethod") - 1])
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for (use in has_usemethods) {
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relevant_row <- which(contents %like% paste0("^", use, " <- function")) + 1
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function_call <- trimws(gsub(".*function(.*)\\{.*", "\\1", contents[relevant_row - 1]))
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function_call1 <- trimws(gsub("[()]", "", strsplit(function_call, ",")[[1]][1]))
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if (any(contents %like% paste0(use, ".grouped_df"))) {
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# this function will have methods for data.frame and grouped_df
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contents[relevant_row] <- paste0(" if (\"grouped_df\" %in% class(", function_call1, ")) ", use, ".grouped_df", function_call, " else ", use, ".data.frame", function_call)
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} else {
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# this function will only have data.frame as method
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contents[relevant_row] <- paste0(" ", use, ".data.frame", function_call)
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}
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# add pm_ prefix
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contents[relevant_row - 1] <- paste0("pm_", contents[relevant_row - 1])
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}
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# correct for NextMethod
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contents <- gsub("NextMethod\\(\"(.*)\"\\)", "\\1.data.frame(...)", contents)
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# correct for 'default' method
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contents <- gsub(".default <-", ".data.frame <-", contents, fixed = TRUE)
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contents <- gsub("pm_group_by_drop.data.frame", "pm_group_by_drop", contents, fixed = TRUE)
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contents <- gsub("(stats::)?setNames", "stats::setNames", contents)
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# now get all those pm_* functions to replace all untransformed function name calls as well
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new_pm_names <- sort(gsub("pm_(.*?) <-.*", "\\1", contents[grepl("^pm_", contents)]))
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for (i in seq_len(length(new_pm_names))) {
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contents <- gsub(paste0("([^a-z._])", new_pm_names[i], "([^a-z._])"), paste0("\\1pm_", new_pm_names[i], "\\2"), contents)
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# starting with a space or a straight bracket or an opening parenthesis, ending with nothing or a non-character or a closing parenthesis
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contents <- gsub(paste0("( |\\[|\\()", new_pm_names[i], "($|[^a-z]|\\))"), paste0("\\1pm_", new_pm_names[i], "\\2"), contents)
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}
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# replace %>% with %pm>%
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contents[which(contents %like% "^\\|\\|") - 1] <- paste0(contents[which(contents %like% "^\\|\\|") - 1], " ||")
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contents[which(contents %like% "^\\|\\|")] <- gsub("^\\|\\|", "", contents[which(contents %like% "^\\|\\|")])
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contents <- gsub("%>%", "%pm>%", contents, fixed = TRUE)
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# fix for new lines, since n() also existed
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contents <- gsub("\\pm_n", "\\n", contents, fixed = TRUE)
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# prefix other functions also with "pm_"
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contents <- gsub("^([a-z_]+)(\\$|)", "pm_\\1\\2", contents)
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# prefix environmental objects and functions
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contents <- gsub("(add_group_columns|add_tally|apply_grouped_function|as_function|as_symbols|build_data_frame|calculate_groups|check_filter|check_if_types|check_name|check_context|collapse_to_sentence|context|deparse_|dotdotdot|drop_dup_list|eval_call|eval_env|eval_expr|eval_select_pos|find_used|flatten|get_group_details|gluestick|group_|groups|groups_set|has_groups|have_name|insert_dot|is.grouped_df|is_df_or_vector|is_empty_list|is_formula|is_named|is_negated_colon|is_nested|is_string|is_wholenumber|join_message|join_worker|names_are_invalid|nth|peek_vars|reconstruct_attrs|replace_na|replace_with|select_|select_context|select_env|select_positions|setup_|split_into_groups|squash|tally|tally_n|validate_case_when_length)", "pm_\\1", contents)
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# now a lot of items are overprefixed
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contents <- gsub("(pm_)+", "pm_", contents)
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contents <- gsub("_pm_", "_", contents)
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contents <- gsub("pm_if (\"grouped_df", "if (\"grouped_df", contents, fixed = TRUE)
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# remove comments and empty lines
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contents <- gsub("#.*", "", contents)
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contents <- contents[trimws(contents) != ""]
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# fix for their relocate()
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contents <- gsub("if (!missing(.before))", "if (!missing(.before) && !is.null(.before))", contents, fixed = TRUE)
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contents <- gsub("if (!missing(.after))", "if (!missing(.after) && !is.null(.after))", contents, fixed = TRUE)
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contents[which(contents %like% "reshape\\($") + 1] <- gsub("data", "as.data.frame(data, stringsAsFactors = FALSE)", contents[which(contents %like% "reshape\\($") + 1])
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contents <- gsub("pm_relocate(.data = long, values_to, .after = -1)", 'pm_relocate(.data = long, "value", .after = -1)', contents, fixed = TRUE)
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# who needs US spelling?
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contents <- contents[contents %unlike% "summarize"]
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# add intro
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contents <- c(
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intro,
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copyright,
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"",
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contents
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)
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writeLines(contents, "R/aa_helper_pm_functions.R")
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# note: pm_left_join() will be overwritten by aaa_helper_functions.R, which contains a faster implementation
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