mirror of
https://github.com/msberends/AMR.git
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215 lines
5.1 KiB
Plaintext
Executable File
215 lines
5.1 KiB
Plaintext
Executable File
# Generated by roxygen2: do not edit by hand
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S3method(as.data.frame,atc)
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S3method(as.data.frame,bactid)
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S3method(as.data.frame,frequency_tbl)
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S3method(as.data.frame,mo)
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S3method(as.double,mic)
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S3method(as.integer,mic)
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S3method(as.numeric,mic)
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S3method(as.vector,frequency_tbl)
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S3method(as_tibble,frequency_tbl)
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S3method(barplot,mic)
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S3method(barplot,rsi)
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S3method(format,frequency_tbl)
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S3method(hist,frequency_tbl)
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S3method(kurtosis,data.frame)
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S3method(kurtosis,default)
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S3method(kurtosis,matrix)
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S3method(plot,frequency_tbl)
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S3method(plot,mic)
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S3method(plot,rsi)
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S3method(print,atc)
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S3method(print,bactid)
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S3method(print,frequency_tbl)
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S3method(print,mic)
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S3method(print,mo)
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S3method(print,rsi)
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S3method(pull,atc)
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S3method(pull,bactid)
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S3method(pull,mo)
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S3method(skewness,data.frame)
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S3method(skewness,default)
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S3method(skewness,matrix)
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S3method(summary,mic)
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S3method(summary,rsi)
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export("%like%")
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export(BRMO)
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export(EUCAST_exceptional_phenotypes)
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export(EUCAST_rules)
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export(MDRO)
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export(MRGN)
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export(ab_atc)
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export(ab_certe)
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export(ab_name)
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export(ab_official)
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export(ab_property)
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export(ab_tradenames)
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export(ab_trivial_nl)
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export(ab_umcg)
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export(abname)
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export(anti_join_microorganisms)
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export(as.atc)
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export(as.bactid)
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export(as.mic)
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export(as.mo)
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export(as.rsi)
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export(atc_ddd)
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export(atc_groups)
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export(atc_property)
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export(count_I)
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export(count_IR)
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export(count_R)
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export(count_S)
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export(count_SI)
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export(count_df)
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export(facet_rsi)
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export(first_isolate)
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export(freq)
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export(frequency_tbl)
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export(full_join_microorganisms)
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export(g.test)
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export(geom_rsi)
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export(ggplot_rsi)
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export(guess_atc)
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export(guess_bactid)
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export(guess_mo)
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export(inner_join_microorganisms)
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export(interpretive_reading)
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export(is.atc)
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export(is.bactid)
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export(is.mic)
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export(is.mo)
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export(is.rsi)
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export(is.rsi.eligible)
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export(key_antibiotics)
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export(key_antibiotics_equal)
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export(kurtosis)
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export(labels_rsi_count)
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export(left_join_microorganisms)
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export(like)
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export(mo_TSN)
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export(mo_class)
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export(mo_family)
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export(mo_fullname)
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export(mo_genus)
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export(mo_gramstain)
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export(mo_order)
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export(mo_phylum)
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export(mo_property)
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export(mo_shortname)
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export(mo_species)
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export(mo_subkingdom)
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export(mo_subspecies)
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export(mo_taxonomy)
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export(mo_type)
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export(n_rsi)
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export(p.symbol)
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export(portion_I)
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export(portion_IR)
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export(portion_R)
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export(portion_S)
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export(portion_SI)
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export(portion_df)
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export(ratio)
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export(resistance_predict)
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export(right_join_microorganisms)
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export(rsi)
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export(rsi_predict)
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export(scale_rsi_colours)
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export(scale_y_percent)
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export(semi_join_microorganisms)
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export(skewness)
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export(theme_rsi)
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export(top_freq)
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exportMethods(as.data.frame.atc)
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exportMethods(as.data.frame.bactid)
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exportMethods(as.data.frame.frequency_tbl)
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exportMethods(as.data.frame.mo)
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exportMethods(as.double.mic)
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exportMethods(as.integer.mic)
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exportMethods(as.numeric.mic)
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exportMethods(as.vector.frequency_tbl)
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exportMethods(as_tibble.frequency_tbl)
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exportMethods(barplot.mic)
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exportMethods(barplot.rsi)
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exportMethods(format.frequency_tbl)
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exportMethods(hist.frequency_tbl)
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exportMethods(kurtosis)
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exportMethods(kurtosis.data.frame)
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exportMethods(kurtosis.default)
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exportMethods(kurtosis.matrix)
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exportMethods(plot.frequency_tbl)
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exportMethods(plot.mic)
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exportMethods(plot.rsi)
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exportMethods(print.atc)
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exportMethods(print.bactid)
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exportMethods(print.frequency_tbl)
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exportMethods(print.mic)
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exportMethods(print.mo)
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exportMethods(print.rsi)
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exportMethods(pull.atc)
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exportMethods(pull.bactid)
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exportMethods(pull.mo)
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exportMethods(skewness)
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exportMethods(skewness.data.frame)
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exportMethods(skewness.default)
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exportMethods(skewness.matrix)
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exportMethods(summary.mic)
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exportMethods(summary.rsi)
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importFrom(curl,nslookup)
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importFrom(data.table,as.data.table)
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importFrom(data.table,data.table)
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importFrom(data.table,setkey)
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importFrom(dplyr,"%>%")
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importFrom(dplyr,arrange)
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importFrom(dplyr,arrange_at)
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importFrom(dplyr,as_tibble)
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importFrom(dplyr,between)
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importFrom(dplyr,bind_rows)
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importFrom(dplyr,case_when)
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importFrom(dplyr,desc)
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importFrom(dplyr,everything)
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importFrom(dplyr,filter)
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importFrom(dplyr,group_by)
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importFrom(dplyr,group_by_at)
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importFrom(dplyr,group_vars)
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importFrom(dplyr,if_else)
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importFrom(dplyr,lag)
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importFrom(dplyr,left_join)
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importFrom(dplyr,mutate)
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importFrom(dplyr,n_distinct)
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importFrom(dplyr,progress_estimated)
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importFrom(dplyr,pull)
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importFrom(dplyr,row_number)
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importFrom(dplyr,select)
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importFrom(dplyr,select_if)
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importFrom(dplyr,slice)
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importFrom(dplyr,summarise)
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importFrom(dplyr,summarise_if)
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importFrom(dplyr,tibble)
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importFrom(dplyr,top_n)
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importFrom(grDevices,boxplot.stats)
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importFrom(graphics,axis)
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importFrom(graphics,barplot)
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importFrom(graphics,hist)
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importFrom(graphics,plot)
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importFrom(graphics,text)
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importFrom(knitr,kable)
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importFrom(rvest,html_children)
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importFrom(rvest,html_node)
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importFrom(rvest,html_nodes)
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importFrom(rvest,html_table)
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importFrom(stats,complete.cases)
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importFrom(stats,fivenum)
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importFrom(stats,glm)
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importFrom(stats,lm)
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importFrom(stats,mad)
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importFrom(stats,pchisq)
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importFrom(stats,predict)
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importFrom(stats,sd)
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importFrom(utils,View)
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importFrom(utils,browseVignettes)
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importFrom(utils,installed.packages)
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importFrom(xml2,read_html)
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