mirror of https://github.com/msberends/AMR.git
50 lines
2.4 KiB
R
50 lines
2.4 KiB
R
# ==================================================================== #
|
|
# TITLE #
|
|
# Antimicrobial Resistance (AMR) Data Analysis for R #
|
|
# #
|
|
# SOURCE #
|
|
# https://github.com/msberends/AMR #
|
|
# #
|
|
# LICENCE #
|
|
# (c) 2018-2021 Berends MS, Luz CF et al. #
|
|
# Developed at the University of Groningen, the Netherlands, in #
|
|
# collaboration with non-profit organisations Certe Medical #
|
|
# Diagnostics & Advice, and University Medical Center Groningen. #
|
|
# #
|
|
# This R package is free software; you can freely use and distribute #
|
|
# it for both personal and commercial purposes under the terms of the #
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
|
# the Free Software Foundation. #
|
|
# We created this package for both routine data analysis and academic #
|
|
# research and it was publicly released in the hope that it will be #
|
|
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
|
|
# #
|
|
# Visit our website for the full manual and a complete tutorial about #
|
|
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
|
|
# ==================================================================== #
|
|
|
|
context("guess_ab_col.R")
|
|
|
|
test_that("guess_ab_col works", {
|
|
skip_on_cran()
|
|
|
|
expect_equal(guess_ab_col(example_isolates, "amox"),
|
|
"AMX")
|
|
expect_equal(guess_ab_col(example_isolates, "amoxicillin"),
|
|
"AMX")
|
|
expect_equal(guess_ab_col(example_isolates, "J01AA07"),
|
|
"TCY")
|
|
expect_equal(guess_ab_col(example_isolates, "tetracycline"),
|
|
"TCY")
|
|
expect_equal(guess_ab_col(example_isolates, "TETR"),
|
|
"TCY")
|
|
|
|
df <- data.frame(AMP_ND10 = "R",
|
|
AMC_ED20 = "S")
|
|
expect_equal(guess_ab_col(df, "ampicillin"),
|
|
"AMP_ND10")
|
|
expect_equal(guess_ab_col(df, "J01CR02"),
|
|
"AMC_ED20")
|
|
|
|
})
|