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AMR
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AMR/pkgdown/extra.js

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/*
# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis for R #
# #
# SOURCE #
# https://github.com/msberends/AMR #
# #
# LICENCE #
# (c) 2018-2021 Berends MS, Luz CF et al. #
# Developed at the University of Groningen, the Netherlands, in #
# collaboration with non-profit organisations Certe Medical #
# Diagnostics & Advice, and University Medical Center Groningen. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
*/
// Add updated Font Awesome 5.8.2 library
$('head').append('<!-- Updated Font Awesome library --><link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.8.2/css/all.css">');
$(document).ready(function() {
// add SurveyMonkey
// $('body').append('<script>(function(t,e,s,o){var n,a,c;t.SMCX=t.SMCX||[],e.getElementById(o)||(n=e.getElementsByTagName(s),a=n[n.length-1],c=e.createElement(s),c.type="text/javascript",c.async=!0,c.id=o,c.src=["https:"===location.protocol?"https://":"http://","widget.surveymonkey.com/collect/website/js/tRaiETqnLgj758hTBazgd_2BrwaGaWbg59AiLjNGdPaaJiBHKqgXKIw46VauwBvZ67.js"].join(""),a.parentNode.insertBefore(c,a))})(window,document,"script","smcx-sdk");</script>');
// add link to survey at home sidebar
// $('.template-home #sidebar .list-unstyled:first').append('<li><strong>Please fill in our survey at</strong> <br><a href="https://www.surveymonkey.com/r/AMR_for_R" target="_blank">https://www.surveymonkey.com/r/AMR_for_R</a></li>');
// remove version label from header
$(".version.label").remove();
// redirect GitLab to GitHub
var url_old = window.location.href;
var url_new = url_old.replace("gitlab", "github");
if (url_old != url_new) {
window.location.replace(url_new);
}
// Replace 'Value' in manual to 'Returned value'
$(".template-reference-topic h2#value").text("Returned value");
// PR for 'R for Data Science' on How To pages
if ($(".template-article").length > 0) {
$('#sidebar').prepend(
'<div id="r4ds">' +
' <a target="_blank" href="https://r4ds.had.co.nz/">' +
' Learn R reading this great book: R for Data Science.' +
' <br><br>' +
' Click to read it online - it was published for free.' +
' <img src="https://github.com/msberends/AMR/raw/master/docs/cover_r4ds.png" height="100px">' +
' </a> ' +
' <hr>' +
'</div>');
}
// edit footer
$('footer').html(
'<div>' +
'<p><code>AMR</code> (for R). Developed at the <a href="https://www.rug.nl">University of Groningen</a> in collaboration with non-profit organisations <a href="https://www.certe.nl">Certe Medical Diagnostics and Advice</a> and <a href="https://www.umcg.nl">University Medical Center Groningen</a>.</p>' +
'<a href="https://www.rug.nl"><img src="https://github.com/msberends/AMR/raw/master/docs/logo_rug.png" class="footer_logo"></a>' +
'</div>');
// all links should open in new tab/window
$('footer').html($('footer').html().replace(/href/g, 'target="_blank" href'));
// doctoral titles of authors
function doct_tit(x) {
if (typeof(x) != "undefined") {
// authors
x = x.replace(/Author, maintainer/g, "Main developer");
x = x.replace(/Author, contributor/g, "Main contributor");
x = x.replace(/Author, thesis advisor/g, "Doctoral advisor");
x = x.replace("Alex", "Prof. Dr. Alex");
x = x.replace("Bhanu", "Prof. Dr. Bhanu");
x = x.replace("Casper", "Prof. Dr. Casper");
x = x.replace("Corinna", "Dr. Corinna");
// others
x = x.replace("Bart", "Dr. Bart");
x = x.replace("Sofia", "Dr. Sofia");
x = x.replace("Dennis", "Dr. Dennis");
x = x.replace("Judith", "Dr. Judith");
x = x.replace("Gwen", "Dr. Gwen");
x = x.replace("Anthony", "Dr. Anthony");
x = x.replace("Rogier", "Dr. Rogier");
}
return(x);
}
$(".template-authors").html(doct_tit($(".template-authors").html()));
$(".template-citation-authors").html(doct_tit($(".template-citation-authors").html()));
$('.template-citation-authors h1').eq(0).text('How to cite');
$('.template-citation-authors h1').eq(1).text('All contributors');
$(".developers").html(doct_tit($(".developers").html()));
$(".developers a[href='authors.html']").text("All contributors...");
// Edit title of manual
$('.template-reference-index h1').text('Manual');
});
$('head').append("<!-- Global site tag (gtag.js) - Google Analytics --> <script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-172114740-1\"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'UA-172114740-1'); </script><!-- Matomo --><script type='text/javascript'> var _paq = _paq || []; /* tracker methods like 'setCustomDimension' should be called before 'trackPageView' */ _paq.push(['setDomains', ['*.msberends.github.io/AMR']]); _paq.push(['enableCrossDomainLinking']); _paq.push(['trackPageView']); _paq.push(['enableLinkTracking']); (function() { var u='https://analyse.uscloud.nl/'; _paq.push(['setTrackerUrl', u+'piwik.php']); _paq.push(['setSiteId', '3']); var d=document, g=d.createElement('script'), s=d.getElementsByTagName('script')[0]; g.type='text/javascript'; g.async=true; g.defer=true; g.src=u+'piwik.js'; s.parentNode.insertBefore(g,s); })();</script><!-- End Matomo Code -->");
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