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mirror of https://github.com/msberends/AMR.git synced 2024-12-25 06:46:11 +01:00
AMR/R
2023-02-22 16:26:13 +01:00
..
aa_amr-package.R sort sir history 2023-01-23 15:01:21 +01:00
aa_globals.R bind_rows 2023-02-10 17:09:48 +01:00
aa_helper_functions.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
aa_helper_pm_functions.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
aa_options.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
ab_from_text.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
ab_property.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
ab_selectors.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
ab.R fix for antibiogram(), transform WHONET data set to sir 2023-02-22 15:40:05 +01:00
age.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
antibiogram.R N for only 1 AB in 2023-02-22 16:26:13 +01:00
atc_online.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
av_from_text.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
av_property.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
av.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
availability.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
bug_drug_combinations.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
count.R Replace RSI with SIR 2023-01-21 23:47:20 +01:00
custom_antimicrobials.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
custom_eucast_rules.R sort sir history 2023-01-23 15:01:21 +01:00
custom_microorganisms.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
data.R fix for antibiogram(), transform WHONET data set to sir 2023-02-22 15:40:05 +01:00
disk.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
eucast_rules.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
first_isolate.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
g.test.R prelim fix for g.test 2023-01-30 12:26:48 +01:00
get_episode.R unit tests 2023-02-12 17:10:48 +01:00
ggplot_pca.R sort sir history 2023-01-23 15:01:21 +01:00
ggplot_sir.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
guess_ab_col.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
italicise_taxonomy.R sort sir history 2023-01-23 15:01:21 +01:00
join_microorganisms.R unit tests 2023-02-18 14:56:06 +01:00
key_antimicrobials.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
kurtosis.R support new mo codes 2022-12-27 15:16:15 +01:00
like.R support new mo codes 2022-12-27 15:16:15 +01:00
mdro.R support for dplyr 1.1.0 2023-02-15 17:02:10 +01:00
mean_amr_distance.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
mic.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
mo_matching_score.R sort sir history 2023-01-23 15:01:21 +01:00
mo_property.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
mo_source.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
mo.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
pca.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
plot.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
proportion.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
random.R revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
resistance_predict.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
sir_calc.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
sir_df.R Replace RSI with SIR 2023-01-21 23:47:20 +01:00
sir.R fix for antibiogram(), transform WHONET data set to sir 2023-02-22 15:40:05 +01:00
skewness.R support new mo codes 2022-12-27 15:16:15 +01:00
sysdata.rda make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
translate.R make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
vctrs.R Replace RSI with SIR 2023-01-21 23:47:20 +01:00
whocc.R support new mo codes 2022-12-27 15:16:15 +01:00
zz_deprecated.R fix for antibiogram(), transform WHONET data set to sir 2023-02-22 15:40:05 +01:00
zzz.R unit tests 2023-02-18 14:56:06 +01:00