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38 lines
1.9 KiB
R
Executable File
38 lines
1.9 KiB
R
Executable File
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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# SOURCE #
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# https://gitlab.com/msberends/AMR #
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# #
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# LICENCE #
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# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# #
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# This R package was created for academic research and was publicly #
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# released in the hope that it will be useful, but it comes WITHOUT #
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# ANY WARRANTY OR LIABILITY. #
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# Visit our website for more info: https://msberends.gitlab.io/AMR. #
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# ==================================================================== #
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context("freq.R")
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test_that("frequency table works", {
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library(clean)
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# mo
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expect_true(is.freq(freq(example_isolates$mo)))
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# for this to work, the output of mo_gramstain() is to be expected as follows:
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expect_equal(mo_gramstain("B_ESCHR_COLI", language = NULL), "Gram-negative")
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expect_equal(mo_gramstain("B_STPHY_AURS", language = NULL), "Gram-positive")
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# rsi
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expect_true(is.freq(freq(example_isolates$AMX)))
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library(dplyr)
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expect_true(is.freq(example_isolates %>% freq(AMX)))
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})
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