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SERVICE NOTICE: This instance will be decommissioned 1 december of this year (2026). Please migrate your projects to our new repository:
https://gitrepo.service.rug.nl
P281424
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AMR
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Code
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aa48c6bf532a8b4b8bf2c37aaef0f7109b813021
AMR
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man
T
History
dr. M.S. (Matthijs) Berends
aa48c6bf53
pm fixes
2023-02-08 16:51:41 +01:00
..
figures
website update
2022-12-11 11:44:29 +01:00
ab_from_text.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
ab_property.Rd
pm fixes
2023-02-08 16:51:41 +01:00
add_custom_antimicrobials.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
add_custom_microorganisms.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
age_groups.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
age.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
AMR-deprecated.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
AMR-options.Rd
add all options to documentation
2023-01-23 20:07:57 +01:00
AMR.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
antibiogram.Rd
fixes
2023-02-06 12:38:52 +01:00
antibiotic_class_selectors.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
antibiotics.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.ab.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.av.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.disk.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.mic.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.mo.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.sir.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
atc_online.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
av_from_text.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
av_property.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
availability.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
bug_drug_combinations.Rd
pm fixes
2023-02-08 16:51:41 +01:00
clinical_breakpoints.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
count.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
custom_eucast_rules.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
dosage.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
eucast_rules.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
example_isolates_unclean.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
example_isolates.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
first_isolate.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
g.test.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
get_episode.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
ggplot_pca.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
ggplot_sir.Rd
add all options to documentation
2023-01-23 20:07:57 +01:00
guess_ab_col.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
intrinsic_resistant.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
italicise_taxonomy.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
join.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
key_antimicrobials.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
kurtosis.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
like.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
mdro.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
mean_amr_distance.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
microorganisms.codes.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
microorganisms.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
mo_matching_score.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
mo_property.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
mo_source.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
pca.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
plot.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
proportion.Rd
use dplyr where available, new
antibiogram()
for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
random.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
resistance_predict.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
skewness.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
translate.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
WHOCC.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
WHONET.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
