mirror of https://github.com/msberends/AMR.git
47 lines
1.2 KiB
R
47 lines
1.2 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/atc.R
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\name{abname}
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\alias{abname}
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\title{Name of an antibiotic}
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\source{
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\code{\link{ablist}}
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}
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\usage{
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abname(abcode, from = "umcg", to = "official", textbetween = " + ",
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tolower = FALSE)
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}
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\arguments{
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\item{abcode}{a code or name, like \code{"amox"}, \code{"cftr"} or \code{"J01CA04"}}
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\item{from, to}{type to transform from and to. See \code{\link{ablist}} for its column names.}
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\item{textbetween}{text to put between multiple returned texts}
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\item{tolower}{return output as lower case with function \code{\link{tolower}}.}
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}
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\description{
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Convert antibiotic codes (from a laboratory information system like MOLIS or GLIMS) to a (trivial) antibiotic name or ATC code, or vice versa. This uses the data from \code{\link{ablist}}.
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}
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\examples{
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abname("AMCL")
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# "amoxicillin and enzyme inhibitor"
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abname("AMCL+GENT")
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# "amoxicillin and enzyme inhibitor + gentamicin"
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abname(c("AMCL", "GENT"))
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# "amoxicillin and enzyme inhibitor" "gentamicin"
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abname("AMCL", to = "trivial")
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# "Amoxicilline/clavulaanzuur"
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abname("AMCL", to = "atc")
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# "J01CR02"
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abname("J01CR02", from = "atc", to = "umcg")
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# "AMCL"
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}
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\keyword{ab}
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\keyword{antibiotics}
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