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Code Releases Activity
AMR/R
History
dr. M.S. (Matthijs) Berends abb5602532
(v2.1.1.9153) mic plot fix
2025-02-22 21:26:38 +01:00
..
aa_amr-package.R
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
aa_globals.R
(v2.1.1.9148) scale fix, antibiogram fix
2025-02-15 12:38:29 +01:00
aa_helper_functions.R
(v2.1.1.9137) examples fix
2025-01-31 16:28:06 +01:00
aa_helper_pm_functions.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
aa_options.R
(v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA
2024-09-22 11:45:51 +02:00
ab_from_text.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
ab_property.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
ab.R
(v2.1.1.9136) console colours, updated Suggests, added as.ab() improvement
2025-01-31 16:01:52 +01:00
age.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
amr_selectors.R
(v2.1.1.9151) update readme
2025-02-15 20:53:12 +01:00
antibiogram.R
(v2.1.1.9151) update readme
2025-02-15 20:53:12 +01:00
atc_online.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
av_from_text.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
av_property.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
av.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
availability.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
bug_drug_combinations.R
(v2.1.1.9129) unit test fix
2025-01-27 16:17:03 +01:00
count.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
custom_antimicrobials.R
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
custom_eucast_rules.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
custom_microorganisms.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
data.R
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
disk.R
(v2.1.1.9095) Python support
2024-10-15 17:12:55 +02:00
eucast_rules.R
(v2.1.1.9142) unit test fix
2025-02-07 19:03:02 +01:00
export_biosample.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
first_isolate.R
(v2.1.1.9141) new AMR selectors, eucast overwrite arg
2025-02-07 18:01:22 +01:00
g.test.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
get_episode.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
ggplot_pca.R
(v2.1.1.9131) implement testthat
2025-01-27 21:43:10 +01:00
ggplot_sir.R
(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values
2025-02-14 14:16:46 +01:00
guess_ab_col.R
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
italicise_taxonomy.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
join_microorganisms.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
key_antimicrobials.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
kurtosis.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
like.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
mdro.R
(v2.1.1.9121) support tidymodels
2024-12-19 20:17:15 +01:00
mean_amr_distance.R
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
mic.R
(v2.1.1.9153) mic plot fix
2025-02-22 21:26:38 +01:00
mo_matching_score.R
(v2.1.1.9133) update math formulae
2025-01-27 22:43:35 +01:00
mo_property.R
(v2.1.1.9082) algorithm updates
2024-09-30 18:46:55 +02:00
mo_source.R
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
mo.R
(v2.1.1.9136) console colours, updated Suggests, added as.ab() improvement
2025-01-31 16:01:52 +01:00
pca.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
plotting.R
(v2.1.1.9153) mic plot fix
2025-02-22 21:26:38 +01:00
proportion.R
(v2.1.1.9140) WISCA fix
2025-02-05 20:48:35 +01:00
random.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
resistance_predict.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
sir_calc.R
(v2.1.1.9095) Python support
2024-10-15 17:12:55 +02:00
sir_df.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
sir.R
(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values
2025-02-14 14:16:46 +01:00
skewness.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
sysdata.rda
(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values
2025-02-14 14:16:46 +01:00
top_n_microorganisms.R
(v2.1.1.9129) unit test fix
2025-01-27 16:17:03 +01:00
translate.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
vctrs.R
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
whocc.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
zz_deprecated.R
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
zzz.R
(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values
2025-02-14 14:16:46 +01:00